Hb_057247_010

Information

Type -
Description -
Location Contig57247: 42-992
Sequence    

Annotation

kegg
ID rcu:RCOM_1148800
description tho2 protein, putative
nr
ID KDP38157.1
description hypothetical protein JCGZ_04800 [Jatropha curcas]
swissprot
ID F4IAT2
description THO complex subunit 2 OS=Arabidopsis thaliana GN=THO2 PE=1 SV=1
trembl
ID A0A067KPU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04800 PE=4 SV=1
Gene Ontology
ID GO:0007165
description tho complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057247_010 0.0 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
2 Hb_005883_040 0.2154043638 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
3 Hb_076233_020 0.2159405227 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
4 Hb_004570_050 0.2303237523 - - kinase, putative [Ricinus communis]
5 Hb_006816_340 0.2346786681 - - -
6 Hb_000136_190 0.2401139205 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
7 Hb_182249_010 0.2439400234 - - -
8 Hb_000997_010 0.2493171187 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
9 Hb_055339_010 0.2528328714 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
10 Hb_169329_010 0.2538120634 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
11 Hb_000258_360 0.2555499529 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
12 Hb_124961_010 0.2594245648 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
13 Hb_170532_010 0.2615484078 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
14 Hb_002370_040 0.2688699357 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
15 Hb_000915_150 0.2694551483 - - -
16 Hb_018118_020 0.2704132036 - - unnamed protein product [Vitis vinifera]
17 Hb_006269_040 0.272045853 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
18 Hb_186304_010 0.273081575 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
19 Hb_006230_040 0.2736254846 - - kinase, putative [Ricinus communis]
20 Hb_000245_160 0.2742444 - - PREDICTED: mavicyanin [Jatropha curcas]

Gene co-expression network

sample Hb_057247_010 Hb_057247_010 Hb_005883_040 Hb_005883_040 Hb_057247_010--Hb_005883_040 Hb_076233_020 Hb_076233_020 Hb_057247_010--Hb_076233_020 Hb_004570_050 Hb_004570_050 Hb_057247_010--Hb_004570_050 Hb_006816_340 Hb_006816_340 Hb_057247_010--Hb_006816_340 Hb_000136_190 Hb_000136_190 Hb_057247_010--Hb_000136_190 Hb_182249_010 Hb_182249_010 Hb_057247_010--Hb_182249_010 Hb_070385_010 Hb_070385_010 Hb_005883_040--Hb_070385_010 Hb_101020_010 Hb_101020_010 Hb_005883_040--Hb_101020_010 Hb_007137_060 Hb_007137_060 Hb_005883_040--Hb_007137_060 Hb_130134_030 Hb_130134_030 Hb_005883_040--Hb_130134_030 Hb_077211_010 Hb_077211_010 Hb_005883_040--Hb_077211_010 Hb_000997_010 Hb_000997_010 Hb_076233_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_076233_020--Hb_014361_050 Hb_055339_010 Hb_055339_010 Hb_076233_020--Hb_055339_010 Hb_076233_020--Hb_004570_050 Hb_169329_010 Hb_169329_010 Hb_076233_020--Hb_169329_010 Hb_170532_010 Hb_170532_010 Hb_004570_050--Hb_170532_010 Hb_124961_010 Hb_124961_010 Hb_004570_050--Hb_124961_010 Hb_004570_050--Hb_006816_340 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_006816_340--Hb_124961_010 Hb_006816_340--Hb_170532_010 Hb_007136_020 Hb_007136_020 Hb_006816_340--Hb_007136_020 Hb_003895_030 Hb_003895_030 Hb_006816_340--Hb_003895_030 Hb_171619_010 Hb_171619_010 Hb_006816_340--Hb_171619_010 Hb_003814_030 Hb_003814_030 Hb_000136_190--Hb_003814_030 Hb_002370_040 Hb_002370_040 Hb_000136_190--Hb_002370_040 Hb_000330_160 Hb_000330_160 Hb_000136_190--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_000136_190--Hb_000062_060 Hb_001508_020 Hb_001508_020 Hb_000136_190--Hb_001508_020 Hb_004657_090 Hb_004657_090 Hb_000136_190--Hb_004657_090 Hb_004052_160 Hb_004052_160 Hb_182249_010--Hb_004052_160 Hb_000122_010 Hb_000122_010 Hb_182249_010--Hb_000122_010 Hb_182249_010--Hb_000179_180 Hb_102437_010 Hb_102437_010 Hb_182249_010--Hb_102437_010 Hb_009393_200 Hb_009393_200 Hb_182249_010--Hb_009393_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0235429 0.0392903 0.0716244 0.0393976 0.0220702 0.103769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0170907 0

CAGE analysis