Hb_182249_010

Information

Type -
Description -
Location Contig182249: 337-751
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17764: 334-472 , PASA_asmbl_17765: 473-734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182249_010 0.0 - - -
2 Hb_004052_160 0.1734128628 - - Chain A, Rna Binding Protein
3 Hb_000122_010 0.1793631529 - - amino acid transporter, putative [Ricinus communis]
4 Hb_000179_180 0.179805722 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
5 Hb_102437_010 0.1800832314 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
6 Hb_004570_050 0.1839541731 - - kinase, putative [Ricinus communis]
7 Hb_009393_200 0.1901994241 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
8 Hb_000589_060 0.1973974085 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
9 Hb_073973_030 0.2007585345 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
10 Hb_071781_010 0.203789645 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
11 Hb_013834_010 0.2178881878 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
12 Hb_040747_010 0.2184035334 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
13 Hb_016006_010 0.2197927677 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_003305_030 0.222989858 - - -
15 Hb_011609_040 0.2232372862 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
16 Hb_068804_080 0.2272010127 - - PREDICTED: protein BRICK 1 [Jatropha curcas]
17 Hb_002600_130 0.2286726111 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
18 Hb_000997_010 0.2288686509 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
19 Hb_006286_010 0.2295837038 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
20 Hb_011932_010 0.2320503213 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]

Gene co-expression network

sample Hb_182249_010 Hb_182249_010 Hb_004052_160 Hb_004052_160 Hb_182249_010--Hb_004052_160 Hb_000122_010 Hb_000122_010 Hb_182249_010--Hb_000122_010 Hb_000179_180 Hb_000179_180 Hb_182249_010--Hb_000179_180 Hb_102437_010 Hb_102437_010 Hb_182249_010--Hb_102437_010 Hb_004570_050 Hb_004570_050 Hb_182249_010--Hb_004570_050 Hb_009393_200 Hb_009393_200 Hb_182249_010--Hb_009393_200 Hb_004052_160--Hb_009393_200 Hb_013358_100 Hb_013358_100 Hb_004052_160--Hb_013358_100 Hb_002196_010 Hb_002196_010 Hb_004052_160--Hb_002196_010 Hb_040747_010 Hb_040747_010 Hb_004052_160--Hb_040747_010 Hb_004052_160--Hb_000122_010 Hb_000122_010--Hb_009393_200 Hb_000186_330 Hb_000186_330 Hb_000122_010--Hb_000186_330 Hb_007163_060 Hb_007163_060 Hb_000122_010--Hb_007163_060 Hb_008511_060 Hb_008511_060 Hb_000122_010--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000122_010--Hb_010053_040 Hb_005656_080 Hb_005656_080 Hb_000122_010--Hb_005656_080 Hb_011932_010 Hb_011932_010 Hb_000179_180--Hb_011932_010 Hb_000059_200 Hb_000059_200 Hb_000179_180--Hb_000059_200 Hb_118720_010 Hb_118720_010 Hb_000179_180--Hb_118720_010 Hb_000152_640 Hb_000152_640 Hb_000179_180--Hb_000152_640 Hb_000179_180--Hb_009393_200 Hb_001484_100 Hb_001484_100 Hb_000179_180--Hb_001484_100 Hb_000594_110 Hb_000594_110 Hb_102437_010--Hb_000594_110 Hb_041895_040 Hb_041895_040 Hb_102437_010--Hb_041895_040 Hb_000003_740 Hb_000003_740 Hb_102437_010--Hb_000003_740 Hb_005394_010 Hb_005394_010 Hb_102437_010--Hb_005394_010 Hb_012258_020 Hb_012258_020 Hb_102437_010--Hb_012258_020 Hb_170532_010 Hb_170532_010 Hb_004570_050--Hb_170532_010 Hb_124961_010 Hb_124961_010 Hb_004570_050--Hb_124961_010 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_009393_200--Hb_010053_040 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
169.929 311.342 623.612 410.087 110.818 374.409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.7421 28.612 28.1114 30.3823 10.9529

CAGE analysis