Hb_170532_010

Information

Type -
Description -
Location Contig170532: 561-697
Sequence    

Annotation

kegg
ID rcu:RCOM_1183590
description cop9 signalosome complex subunit 8 (csn complex subunit 8), putative
nr
ID XP_012065643.1
description PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
swissprot
ID P43255
description COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1
trembl
ID A0A067L5B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16904 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170532_010 0.0 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
2 Hb_124961_010 0.0451810011 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
3 Hb_171619_010 0.1122265664 - - protein binding protein, putative [Ricinus communis]
4 Hb_004570_050 0.1288664342 - - kinase, putative [Ricinus communis]
5 Hb_000160_150 0.155571329 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
6 Hb_002783_010 0.1655357485 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
7 Hb_078568_010 0.1768044106 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
8 Hb_007136_020 0.1887353799 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
9 Hb_006816_340 0.1956683551 - - -
10 Hb_000152_670 0.1985813782 - - hypothetical protein VITISV_037603 [Vitis vinifera]
11 Hb_160203_010 0.1988475062 - - -
12 Hb_101020_010 0.2005808873 - - -
13 Hb_073973_030 0.2021450859 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
14 Hb_000099_090 0.2023568293 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
15 Hb_000169_190 0.2085322029 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
16 Hb_016006_010 0.2093162087 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_011932_010 0.2112008926 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
18 Hb_003297_020 0.2124384706 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_005155_020 0.2126615345 - - -
20 Hb_000258_320 0.2129628233 - - -

Gene co-expression network

sample Hb_170532_010 Hb_170532_010 Hb_124961_010 Hb_124961_010 Hb_170532_010--Hb_124961_010 Hb_171619_010 Hb_171619_010 Hb_170532_010--Hb_171619_010 Hb_004570_050 Hb_004570_050 Hb_170532_010--Hb_004570_050 Hb_000160_150 Hb_000160_150 Hb_170532_010--Hb_000160_150 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_124961_010--Hb_171619_010 Hb_124961_010--Hb_004570_050 Hb_124961_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_124961_010--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_124961_010--Hb_101020_010 Hb_171619_010--Hb_000160_150 Hb_003297_020 Hb_003297_020 Hb_171619_010--Hb_003297_020 Hb_171619_010--Hb_101020_010 Hb_006230_040 Hb_006230_040 Hb_171619_010--Hb_006230_040 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_002708_020 Hb_002708_020 Hb_000160_150--Hb_002708_020 Hb_027402_090 Hb_027402_090 Hb_000160_150--Hb_027402_090 Hb_008246_030 Hb_008246_030 Hb_000160_150--Hb_008246_030 Hb_002686_330 Hb_002686_330 Hb_000160_150--Hb_002686_330 Hb_118720_010 Hb_118720_010 Hb_002783_010--Hb_118720_010 Hb_002742_080 Hb_002742_080 Hb_002783_010--Hb_002742_080 Hb_015354_010 Hb_015354_010 Hb_002783_010--Hb_015354_010 Hb_000152_670 Hb_000152_670 Hb_002783_010--Hb_000152_670 Hb_001052_040 Hb_001052_040 Hb_002783_010--Hb_001052_040 Hb_001865_040 Hb_001865_040 Hb_002783_010--Hb_001865_040 Hb_000099_090 Hb_000099_090 Hb_078568_010--Hb_000099_090 Hb_075230_010 Hb_075230_010 Hb_078568_010--Hb_075230_010 Hb_016006_010 Hb_016006_010 Hb_078568_010--Hb_016006_010 Hb_003902_060 Hb_003902_060 Hb_078568_010--Hb_003902_060 Hb_000731_230 Hb_000731_230 Hb_078568_010--Hb_000731_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5556.14 4725.03 7484.49 2267.5 3060.43 11286.1
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1117.97 1325.76 439.761 500.223 174.22

CAGE analysis