Hb_078568_010

Information

Type -
Description -
Location Contig78568: 357-640
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013245mg
description hypothetical protein
nr
ID XP_007201246.1
description hypothetical protein PRUPE_ppa013245mg [Prunus persica]
swissprot
ID Q9FKB0
description Sm-like protein LSM5 OS=Arabidopsis thaliana GN=LSM5 PE=1 SV=1
trembl
ID M5W6L9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013245mg PE=4 SV=1
Gene Ontology
ID GO:0019013
description u6 snrna-associated sm-like protein lsm5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078568_010 0.0 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
2 Hb_170532_010 0.1768044106 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
3 Hb_000099_090 0.1830372007 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
4 Hb_075230_010 0.1906545936 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
5 Hb_016006_010 0.191411212 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_003902_060 0.1944594469 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
7 Hb_000731_230 0.1995851324 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
8 Hb_000175_090 0.2071501048 - - conserved hypothetical protein [Ricinus communis]
9 Hb_028341_010 0.2087270739 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
10 Hb_124961_010 0.2093467445 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
11 Hb_100105_010 0.2096828281 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
12 Hb_002783_010 0.2103720729 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
13 Hb_188996_010 0.2119090772 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004570_050 0.2122774508 - - kinase, putative [Ricinus communis]
15 Hb_003581_210 0.212321867 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
16 Hb_009393_180 0.214892669 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
17 Hb_000258_320 0.2155814063 - - -
18 Hb_073973_030 0.2217369838 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
19 Hb_185516_010 0.2219091737 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
20 Hb_001218_050 0.2239738892 - - Ribosome-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_078568_010 Hb_078568_010 Hb_170532_010 Hb_170532_010 Hb_078568_010--Hb_170532_010 Hb_000099_090 Hb_000099_090 Hb_078568_010--Hb_000099_090 Hb_075230_010 Hb_075230_010 Hb_078568_010--Hb_075230_010 Hb_016006_010 Hb_016006_010 Hb_078568_010--Hb_016006_010 Hb_003902_060 Hb_003902_060 Hb_078568_010--Hb_003902_060 Hb_000731_230 Hb_000731_230 Hb_078568_010--Hb_000731_230 Hb_124961_010 Hb_124961_010 Hb_170532_010--Hb_124961_010 Hb_171619_010 Hb_171619_010 Hb_170532_010--Hb_171619_010 Hb_004570_050 Hb_004570_050 Hb_170532_010--Hb_004570_050 Hb_000160_150 Hb_000160_150 Hb_170532_010--Hb_000160_150 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_000099_090--Hb_016006_010 Hb_073973_030 Hb_073973_030 Hb_000099_090--Hb_073973_030 Hb_027472_210 Hb_027472_210 Hb_000099_090--Hb_027472_210 Hb_002890_150 Hb_002890_150 Hb_000099_090--Hb_002890_150 Hb_000169_190 Hb_000169_190 Hb_000099_090--Hb_000169_190 Hb_000890_010 Hb_000890_010 Hb_000099_090--Hb_000890_010 Hb_009393_180 Hb_009393_180 Hb_075230_010--Hb_009393_180 Hb_001484_100 Hb_001484_100 Hb_075230_010--Hb_001484_100 Hb_012634_020 Hb_012634_020 Hb_075230_010--Hb_012634_020 Hb_001277_190 Hb_001277_190 Hb_075230_010--Hb_001277_190 Hb_027402_040 Hb_027402_040 Hb_075230_010--Hb_027402_040 Hb_016006_010--Hb_073973_030 Hb_011932_010 Hb_011932_010 Hb_016006_010--Hb_011932_010 Hb_016006_010--Hb_001484_100 Hb_000589_060 Hb_000589_060 Hb_016006_010--Hb_000589_060 Hb_016006_010--Hb_000890_010 Hb_100105_010 Hb_100105_010 Hb_003902_060--Hb_100105_010 Hb_003902_060--Hb_000731_230 Hb_003902_060--Hb_075230_010 Hb_003902_060--Hb_000099_090 Hb_000045_280 Hb_000045_280 Hb_003902_060--Hb_000045_280 Hb_000731_230--Hb_075230_010 Hb_001196_040 Hb_001196_040 Hb_000731_230--Hb_001196_040 Hb_149714_010 Hb_149714_010 Hb_000731_230--Hb_149714_010 Hb_000731_230--Hb_100105_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8085.15 6318.7 9375.16 3345.7 1168.25 7664.64
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1932.88 3078.32 804.436 541.201 197.285

CAGE analysis