Hb_027402_040

Information

Type -
Description -
Location Contig27402: 21085-22876
Sequence    

Annotation

kegg
ID rcu:RCOM_1471570
description Thioredoxin II, putative
nr
ID XP_002514739.1
description Thioredoxin II, putative [Ricinus communis]
swissprot
ID O64654
description Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1
trembl
ID B9RLX0
description Thioredoxin II, putative OS=Ricinus communis GN=RCOM_1471570 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin-like 1- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28691: 21252-22970
cDNA
(Sanger)
(ID:Location)		 038_I21.ab1: 21377-22536

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027402_040 0.0 - - Thioredoxin II, putative [Ricinus communis]
2 Hb_003119_050 0.1077088721 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
3 Hb_003228_030 0.1365200043 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
4 Hb_005054_310 0.1411277353 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
5 Hb_163508_010 0.1451966292 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
6 Hb_000836_370 0.1476393273 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
7 Hb_005000_300 0.1503646866 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
8 Hb_091226_010 0.1509932038 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
9 Hb_000890_010 0.155399845 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000692_120 0.1557749967 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
11 Hb_003078_030 0.1649152442 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
12 Hb_000099_090 0.1664795656 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
13 Hb_004920_030 0.171653083 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1 [Jatropha curcas]
14 Hb_001196_080 0.1733229903 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
15 Hb_012634_020 0.1734241779 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
16 Hb_000056_300 0.1738486786 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
17 Hb_000221_230 0.1757046123 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
18 Hb_001484_100 0.1771119645 - - PREDICTED: cyanate hydratase [Jatropha curcas]
19 Hb_015026_040 0.1773310627 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
20 Hb_000465_080 0.1780693374 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]

Gene co-expression network

sample Hb_027402_040 Hb_027402_040 Hb_003119_050 Hb_003119_050 Hb_027402_040--Hb_003119_050 Hb_003228_030 Hb_003228_030 Hb_027402_040--Hb_003228_030 Hb_005054_310 Hb_005054_310 Hb_027402_040--Hb_005054_310 Hb_163508_010 Hb_163508_010 Hb_027402_040--Hb_163508_010 Hb_000836_370 Hb_000836_370 Hb_027402_040--Hb_000836_370 Hb_005000_300 Hb_005000_300 Hb_027402_040--Hb_005000_300 Hb_000890_010 Hb_000890_010 Hb_003119_050--Hb_000890_010 Hb_003119_050--Hb_003228_030 Hb_013405_150 Hb_013405_150 Hb_003119_050--Hb_013405_150 Hb_091226_010 Hb_091226_010 Hb_003119_050--Hb_091226_010 Hb_000152_760 Hb_000152_760 Hb_003119_050--Hb_000152_760 Hb_003228_030--Hb_005054_310 Hb_000336_110 Hb_000336_110 Hb_003228_030--Hb_000336_110 Hb_005610_080 Hb_005610_080 Hb_003228_030--Hb_005610_080 Hb_003228_030--Hb_000890_010 Hb_006132_040 Hb_006132_040 Hb_003228_030--Hb_006132_040 Hb_000227_310 Hb_000227_310 Hb_003228_030--Hb_000227_310 Hb_005054_310--Hb_000836_370 Hb_000056_300 Hb_000056_300 Hb_005054_310--Hb_000056_300 Hb_005054_310--Hb_000227_310 Hb_128695_030 Hb_128695_030 Hb_005054_310--Hb_128695_030 Hb_001484_100 Hb_001484_100 Hb_005054_310--Hb_001484_100 Hb_163508_010--Hb_003119_050 Hb_000540_220 Hb_000540_220 Hb_163508_010--Hb_000540_220 Hb_007188_060 Hb_007188_060 Hb_163508_010--Hb_007188_060 Hb_074184_010 Hb_074184_010 Hb_163508_010--Hb_074184_010 Hb_000099_090 Hb_000099_090 Hb_163508_010--Hb_000099_090 Hb_000836_370--Hb_005000_300 Hb_000836_370--Hb_000056_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_003078_030 Hb_003078_030 Hb_000836_370--Hb_003078_030 Hb_000836_370--Hb_001484_100 Hb_000465_080 Hb_000465_080 Hb_005000_300--Hb_000465_080 Hb_005000_300--Hb_000056_300 Hb_005000_300--Hb_003078_030 Hb_005000_300--Hb_001231_080 Hb_005000_300--Hb_005054_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.5395 133.44 97.3135 26.7381 35.0533 31.1776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5351 10.1845 7.76554 5.61846 6.47045

CAGE analysis