Hb_003119_050

Information

Type -
Description -
Location Contig3119: 21222-25026
Sequence    

Annotation

kegg
ID cit:102621261
description bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic-like
nr
ID XP_012069163.1
description PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
swissprot
ID P47924
description Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic OS=Arabidopsis thaliana GN=RIBA1 PE=1 SV=2
trembl
ID A0A067L8V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24929 PE=3 SV=1
Gene Ontology
ID GO:0009570
description bifunctional riboflavin biosynthesis protein riba chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32970: 22851-23088 , PASA_asmbl_32971: 21346-25090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_050 0.0 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
2 Hb_027402_040 0.1077088721 - - Thioredoxin II, putative [Ricinus communis]
3 Hb_000890_010 0.1153405606 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003228_030 0.1380186757 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
5 Hb_013405_150 0.1433733526 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
6 Hb_091226_010 0.1480402498 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
7 Hb_000152_760 0.1540553393 - - conserved hypothetical protein [Ricinus communis]
8 Hb_163508_010 0.1564366304 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
9 Hb_000152_150 0.1604619619 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
10 Hb_006132_040 0.1621067475 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
11 Hb_005054_310 0.1624985252 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
12 Hb_000692_120 0.1656992449 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
13 Hb_001196_080 0.1667096599 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
14 Hb_004920_030 0.1695050455 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1 [Jatropha curcas]
15 Hb_003529_180 0.1695877147 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
16 Hb_005610_080 0.1701289446 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004236_030 0.1708033586 - - unknown [Lotus japonicus]
18 Hb_001300_100 0.1740161575 - - -
19 Hb_000997_150 0.1786943986 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_128695_030 0.1800805933 - - heat shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003119_050 Hb_003119_050 Hb_027402_040 Hb_027402_040 Hb_003119_050--Hb_027402_040 Hb_000890_010 Hb_000890_010 Hb_003119_050--Hb_000890_010 Hb_003228_030 Hb_003228_030 Hb_003119_050--Hb_003228_030 Hb_013405_150 Hb_013405_150 Hb_003119_050--Hb_013405_150 Hb_091226_010 Hb_091226_010 Hb_003119_050--Hb_091226_010 Hb_000152_760 Hb_000152_760 Hb_003119_050--Hb_000152_760 Hb_027402_040--Hb_003228_030 Hb_005054_310 Hb_005054_310 Hb_027402_040--Hb_005054_310 Hb_163508_010 Hb_163508_010 Hb_027402_040--Hb_163508_010 Hb_000836_370 Hb_000836_370 Hb_027402_040--Hb_000836_370 Hb_005000_300 Hb_005000_300 Hb_027402_040--Hb_005000_300 Hb_006132_040 Hb_006132_040 Hb_000890_010--Hb_006132_040 Hb_000890_010--Hb_013405_150 Hb_005610_080 Hb_005610_080 Hb_000890_010--Hb_005610_080 Hb_000077_120 Hb_000077_120 Hb_000890_010--Hb_000077_120 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010 Hb_003228_030--Hb_005054_310 Hb_000336_110 Hb_000336_110 Hb_003228_030--Hb_000336_110 Hb_003228_030--Hb_005610_080 Hb_003228_030--Hb_000890_010 Hb_003228_030--Hb_006132_040 Hb_000227_310 Hb_000227_310 Hb_003228_030--Hb_000227_310 Hb_013405_150--Hb_000077_120 Hb_013405_150--Hb_044155_010 Hb_013405_150--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_005499_010 Hb_005499_010 Hb_091226_010--Hb_005499_010 Hb_000084_240 Hb_000084_240 Hb_091226_010--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_091226_010--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_091226_010--Hb_000045_260 Hb_000454_140 Hb_000454_140 Hb_091226_010--Hb_000454_140 Hb_003078_030 Hb_003078_030 Hb_091226_010--Hb_003078_030 Hb_000152_150 Hb_000152_150 Hb_000152_760--Hb_000152_150 Hb_002478_040 Hb_002478_040 Hb_000152_760--Hb_002478_040 Hb_010368_080 Hb_010368_080 Hb_000152_760--Hb_010368_080 Hb_000152_760--Hb_006132_040 Hb_000152_760--Hb_091226_010 Hb_000979_060 Hb_000979_060 Hb_000152_760--Hb_000979_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.8918 160.131 171.512 41.0798 69.1925 33.2139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2666 13.8261 23.6833 7.83348 18.6247

CAGE analysis