Hb_000152_760

Information

Type -
Description -
Location Contig152: 612765-616939
Sequence    

Annotation

kegg
ID rcu:RCOM_1500460
description hypothetical protein
nr
ID XP_002510957.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B6SGC5
description Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1
trembl
ID B9R9T2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13050: 612940-616936 , PASA_asmbl_13051: 614470-614897 , PASA_asmbl_13052: 613715-613966 , PASA_asmbl_13053: 616162-616323 , PASA_asmbl_13054: 615883-616147 , PASA_asmbl_13055: 615262-615596
cDNA
(Sanger)
(ID:Location)		 007_K19.ab1: 612994-616586

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_760 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000152_150 0.0815837393 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
3 Hb_002478_040 0.1305980657 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
4 Hb_010368_080 0.1318925406 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
5 Hb_006132_040 0.1354139828 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
6 Hb_091226_010 0.1371874885 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
7 Hb_000979_060 0.1379302206 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
8 Hb_000045_260 0.1382137554 - - protein with unknown function [Ricinus communis]
9 Hb_000684_100 0.138499329 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
10 Hb_005499_010 0.1408100393 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
11 Hb_013405_150 0.141976106 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
12 Hb_002107_060 0.1441316586 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
13 Hb_000890_010 0.1444321599 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000454_140 0.1469136093 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
15 Hb_004236_030 0.1481237573 - - unknown [Lotus japonicus]
16 Hb_090782_010 0.150457108 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
17 Hb_002897_100 0.1506413984 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_011631_010 0.1529525735 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
19 Hb_000291_030 0.153545678 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
20 Hb_003119_050 0.1540553393 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000152_760 Hb_000152_760 Hb_000152_150 Hb_000152_150 Hb_000152_760--Hb_000152_150 Hb_002478_040 Hb_002478_040 Hb_000152_760--Hb_002478_040 Hb_010368_080 Hb_010368_080 Hb_000152_760--Hb_010368_080 Hb_006132_040 Hb_006132_040 Hb_000152_760--Hb_006132_040 Hb_091226_010 Hb_091226_010 Hb_000152_760--Hb_091226_010 Hb_000979_060 Hb_000979_060 Hb_000152_760--Hb_000979_060 Hb_006538_130 Hb_006538_130 Hb_000152_150--Hb_006538_130 Hb_000152_150--Hb_006132_040 Hb_002107_060 Hb_002107_060 Hb_000152_150--Hb_002107_060 Hb_000187_030 Hb_000187_030 Hb_000152_150--Hb_000187_030 Hb_003228_030 Hb_003228_030 Hb_000152_150--Hb_003228_030 Hb_004635_030 Hb_004635_030 Hb_002478_040--Hb_004635_030 Hb_002478_040--Hb_000979_060 Hb_000579_190 Hb_000579_190 Hb_002478_040--Hb_000579_190 Hb_013405_150 Hb_013405_150 Hb_002478_040--Hb_013405_150 Hb_003605_050 Hb_003605_050 Hb_002478_040--Hb_003605_050 Hb_012305_140 Hb_012305_140 Hb_010368_080--Hb_012305_140 Hb_001369_030 Hb_001369_030 Hb_010368_080--Hb_001369_030 Hb_004267_060 Hb_004267_060 Hb_010368_080--Hb_004267_060 Hb_004526_010 Hb_004526_010 Hb_010368_080--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_010368_080--Hb_000796_120 Hb_004837_220 Hb_004837_220 Hb_010368_080--Hb_004837_220 Hb_005610_080 Hb_005610_080 Hb_006132_040--Hb_005610_080 Hb_000890_010 Hb_000890_010 Hb_006132_040--Hb_000890_010 Hb_004236_030 Hb_004236_030 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_005499_010 Hb_005499_010 Hb_091226_010--Hb_005499_010 Hb_000084_240 Hb_000084_240 Hb_091226_010--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_091226_010--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_091226_010--Hb_000045_260 Hb_000454_140 Hb_000454_140 Hb_091226_010--Hb_000454_140 Hb_003078_030 Hb_003078_030 Hb_091226_010--Hb_003078_030 Hb_000684_100 Hb_000684_100 Hb_000979_060--Hb_000684_100 Hb_005194_020 Hb_005194_020 Hb_000979_060--Hb_005194_020 Hb_002311_480 Hb_002311_480 Hb_000979_060--Hb_002311_480 Hb_000009_220 Hb_000009_220 Hb_000979_060--Hb_000009_220 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000979_060--Hb_000579_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.6497 165.427 179.937 40.9957 63.4273 20.2819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.2287 26.881 25.6955 30.4105 24.4514

CAGE analysis