Hb_006538_130

Information

Type -
Description -
Location Contig6538: 117940-120490
Sequence    

Annotation

kegg
ID tcc:TCM_009867
description hypothetical protein
nr
ID XP_007044341.1
description Uncharacterized protein TCM_009867 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E6F3
description Uncharacterized protein OS=Theobroma cacao GN=TCM_009867 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52615: 118090-120356 , PASA_asmbl_52616: 118866-119273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_130 0.0 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
2 Hb_000375_290 0.0795646394 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_008695_090 0.0903251401 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
4 Hb_000048_080 0.0918492311 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
5 Hb_000227_270 0.0941885287 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
6 Hb_023226_070 0.1027520068 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004635_030 0.1042467463 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
8 Hb_001245_050 0.104459802 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
9 Hb_003605_050 0.1051374646 - - protein with unknown function [Ricinus communis]
10 Hb_000866_450 0.1066739315 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_004943_030 0.1070577636 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
12 Hb_011631_010 0.1097742528 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
13 Hb_001225_030 0.1119604502 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
14 Hb_001638_030 0.1137377222 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
15 Hb_001558_060 0.1155974044 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
16 Hb_000579_190 0.1160701255 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
17 Hb_003777_110 0.1161323018 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
18 Hb_003925_040 0.117792745 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
19 Hb_033152_090 0.1182107545 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
20 Hb_000115_340 0.1190056188 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]

Gene co-expression network

sample Hb_006538_130 Hb_006538_130 Hb_000375_290 Hb_000375_290 Hb_006538_130--Hb_000375_290 Hb_008695_090 Hb_008695_090 Hb_006538_130--Hb_008695_090 Hb_000048_080 Hb_000048_080 Hb_006538_130--Hb_000048_080 Hb_000227_270 Hb_000227_270 Hb_006538_130--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_006538_130--Hb_023226_070 Hb_004635_030 Hb_004635_030 Hb_006538_130--Hb_004635_030 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000375_290--Hb_000048_080 Hb_001558_060 Hb_001558_060 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_000375_290--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_008695_090--Hb_004943_030 Hb_008695_090--Hb_000375_290 Hb_003682_030 Hb_003682_030 Hb_008695_090--Hb_003682_030 Hb_000723_110 Hb_000723_110 Hb_008695_090--Hb_000723_110 Hb_001754_030 Hb_001754_030 Hb_008695_090--Hb_001754_030 Hb_000169_080 Hb_000169_080 Hb_008695_090--Hb_000169_080 Hb_000086_430 Hb_000086_430 Hb_000048_080--Hb_000086_430 Hb_006452_180 Hb_006452_180 Hb_000048_080--Hb_006452_180 Hb_010287_020 Hb_010287_020 Hb_000048_080--Hb_010287_020 Hb_003470_040 Hb_003470_040 Hb_000048_080--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000048_080--Hb_004319_050 Hb_007290_030 Hb_007290_030 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_000227_270--Hb_023226_070 Hb_000227_270--Hb_004943_030 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_000094_090 Hb_000094_090 Hb_023226_070--Hb_000094_090 Hb_023226_070--Hb_001754_030 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040 Hb_002478_040 Hb_002478_040 Hb_004635_030--Hb_002478_040 Hb_005194_020 Hb_005194_020 Hb_004635_030--Hb_005194_020 Hb_004635_030--Hb_008695_090 Hb_000291_030 Hb_000291_030 Hb_004635_030--Hb_000291_030 Hb_001477_070 Hb_001477_070 Hb_004635_030--Hb_001477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4606 82.7186 72.6414 34.87 24.0868 21.3765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.625 19.9936 23.5676 14.9554 25.1071

CAGE analysis