Hb_000890_010

Information

Type -
Description -
Location Contig890: 2428-5244
Sequence    

Annotation

kegg
ID rcu:RCOM_2117770
description hypothetical protein
nr
ID XP_002535238.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAG9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2117770 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61576: 4413-4853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006132_040 0.0765157979 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
3 Hb_013405_150 0.0802205235 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
4 Hb_005610_080 0.0892451662 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000077_120 0.0898581389 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
6 Hb_004236_030 0.1008969675 - - unknown [Lotus japonicus]
7 Hb_044155_010 0.1058359824 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
8 Hb_003228_030 0.1060842849 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
9 Hb_005054_310 0.10610912 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
10 Hb_001621_110 0.1122997337 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
11 Hb_012305_140 0.1123668597 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
12 Hb_008165_030 0.1152432039 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
13 Hb_003119_050 0.1153405606 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
14 Hb_003992_180 0.1153859062 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
15 Hb_000345_490 0.115396077 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
16 Hb_002890_150 0.1161025432 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial [Jatropha curcas]
17 Hb_002291_060 0.1201773691 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
18 Hb_004725_030 0.1236885775 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
19 Hb_005054_190 0.1255633974 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
20 Hb_030545_030 0.1272639175 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_010 Hb_000890_010 Hb_006132_040 Hb_006132_040 Hb_000890_010--Hb_006132_040 Hb_013405_150 Hb_013405_150 Hb_000890_010--Hb_013405_150 Hb_005610_080 Hb_005610_080 Hb_000890_010--Hb_005610_080 Hb_000077_120 Hb_000077_120 Hb_000890_010--Hb_000077_120 Hb_004236_030 Hb_004236_030 Hb_000890_010--Hb_004236_030 Hb_044155_010 Hb_044155_010 Hb_000890_010--Hb_044155_010 Hb_006132_040--Hb_005610_080 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_013405_150--Hb_000077_120 Hb_013405_150--Hb_044155_010 Hb_013405_150--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_013405_150--Hb_000139_220 Hb_000343_150 Hb_000343_150 Hb_013405_150--Hb_000343_150 Hb_000024_120 Hb_000024_120 Hb_005610_080--Hb_000024_120 Hb_003430_030 Hb_003430_030 Hb_005610_080--Hb_003430_030 Hb_000345_490 Hb_000345_490 Hb_005610_080--Hb_000345_490 Hb_005054_190 Hb_005054_190 Hb_005610_080--Hb_005054_190 Hb_002291_060 Hb_002291_060 Hb_000077_120--Hb_002291_060 Hb_000077_120--Hb_044155_010 Hb_002890_150 Hb_002890_150 Hb_000077_120--Hb_002890_150 Hb_000077_120--Hb_000139_220 Hb_000579_190 Hb_000579_190 Hb_004236_030--Hb_000579_190 Hb_001558_060 Hb_001558_060 Hb_004236_030--Hb_001558_060 Hb_000375_290 Hb_000375_290 Hb_004236_030--Hb_000375_290 Hb_002107_060 Hb_002107_060 Hb_004236_030--Hb_002107_060 Hb_044155_010--Hb_002291_060 Hb_044155_010--Hb_006132_040 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.9325 40.0777 45.7915 13.3506 18.1528 14.2222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92329 5.13339 6.2356 8.25642 9.6831

CAGE analysis