Hb_000540_220

Information

Type -
Description -
Location Contig540: 284314-290851
Sequence    

Annotation

kegg
ID rcu:RCOM_0328390
description hypothetical protein
nr
ID KDP44138.1
description hypothetical protein JCGZ_05605 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LA89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05605 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47834: 284315-285242 , PASA_asmbl_47835: 284315-285195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000540_220 0.0 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
2 Hb_163508_010 0.1751270526 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
3 Hb_002965_070 0.1888726808 - - PREDICTED: extensin [Jatropha curcas]
4 Hb_000164_090 0.1904914359 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
5 Hb_007188_060 0.1915386523 - - -
6 Hb_000221_230 0.192203041 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
7 Hb_000563_510 0.1961485391 - - epoxide hydrolase, putative [Ricinus communis]
8 Hb_002960_100 0.1963650012 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
9 Hb_074184_010 0.200173383 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_061908_030 0.2042364389 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
11 Hb_089114_010 0.2100389934 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
12 Hb_002897_020 0.2138648474 - - phosphate transporter [Manihot esculenta]
13 Hb_008020_020 0.2159835391 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
14 Hb_004586_130 0.2168105971 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000172_490 0.2183998027 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
16 Hb_007163_080 0.2189389734 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
17 Hb_010126_030 0.2190592444 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
18 Hb_000185_230 0.2193389962 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_104641_010 0.2218045373 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
20 Hb_001059_090 0.2272730647 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]

Gene co-expression network

sample Hb_000540_220 Hb_000540_220 Hb_163508_010 Hb_163508_010 Hb_000540_220--Hb_163508_010 Hb_002965_070 Hb_002965_070 Hb_000540_220--Hb_002965_070 Hb_000164_090 Hb_000164_090 Hb_000540_220--Hb_000164_090 Hb_007188_060 Hb_007188_060 Hb_000540_220--Hb_007188_060 Hb_000221_230 Hb_000221_230 Hb_000540_220--Hb_000221_230 Hb_000563_510 Hb_000563_510 Hb_000540_220--Hb_000563_510 Hb_027402_040 Hb_027402_040 Hb_163508_010--Hb_027402_040 Hb_003119_050 Hb_003119_050 Hb_163508_010--Hb_003119_050 Hb_163508_010--Hb_007188_060 Hb_074184_010 Hb_074184_010 Hb_163508_010--Hb_074184_010 Hb_000099_090 Hb_000099_090 Hb_163508_010--Hb_000099_090 Hb_047442_010 Hb_047442_010 Hb_002965_070--Hb_047442_010 Hb_089114_010 Hb_089114_010 Hb_002965_070--Hb_089114_010 Hb_000317_190 Hb_000317_190 Hb_002965_070--Hb_000317_190 Hb_002965_070--Hb_000563_510 Hb_000308_010 Hb_000308_010 Hb_002965_070--Hb_000308_010 Hb_033930_010 Hb_033930_010 Hb_002965_070--Hb_033930_010 Hb_000164_090--Hb_007188_060 Hb_000164_090--Hb_163508_010 Hb_002897_020 Hb_002897_020 Hb_000164_090--Hb_002897_020 Hb_004204_180 Hb_004204_180 Hb_000164_090--Hb_004204_180 Hb_004800_210 Hb_004800_210 Hb_000164_090--Hb_004800_210 Hb_008203_020 Hb_008203_020 Hb_007188_060--Hb_008203_020 Hb_055339_010 Hb_055339_010 Hb_007188_060--Hb_055339_010 Hb_007188_060--Hb_074184_010 Hb_015026_040 Hb_015026_040 Hb_000221_230--Hb_015026_040 Hb_004586_130 Hb_004586_130 Hb_000221_230--Hb_004586_130 Hb_008020_020 Hb_008020_020 Hb_000221_230--Hb_008020_020 Hb_005394_010 Hb_005394_010 Hb_000221_230--Hb_005394_010 Hb_000680_180 Hb_000680_180 Hb_000221_230--Hb_000680_180 Hb_041895_040 Hb_041895_040 Hb_000221_230--Hb_041895_040 Hb_002960_100 Hb_002960_100 Hb_000563_510--Hb_002960_100 Hb_006694_030 Hb_006694_030 Hb_000563_510--Hb_006694_030 Hb_000563_510--Hb_089114_010 Hb_004837_200 Hb_004837_200 Hb_000563_510--Hb_004837_200 Hb_086614_010 Hb_086614_010 Hb_000563_510--Hb_086614_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0292 106.727 125.559 9.35169 12.3661 11.6969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.878288 3.29805 1.07675 3.67517 2.53249

CAGE analysis