Hb_004800_210

Information

Type -
Description -
Location Contig4800: 163180-163524
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12780g
description POPTRDRAFT_764723; hypothetical protein
nr
ID XP_002310803.1
description hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HEW6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12780g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_210 0.0 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
2 Hb_011942_030 0.21976518 - - -
3 Hb_049884_010 0.2284398735 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_000164_090 0.2511582554 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
5 Hb_002897_020 0.2558888944 - - phosphate transporter [Manihot esculenta]
6 Hb_000540_220 0.2696113023 - - hypothetical protein JCGZ_05605 [Jatropha curcas]
7 Hb_012052_030 0.2733687753 - - -
8 Hb_007188_060 0.2736229229 - - -
9 Hb_004117_250 0.2736643392 - - PREDICTED: expansin-A8-like [Populus euphratica]
10 Hb_114674_010 0.2816392238 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_171974_010 0.2827930362 - - aldo-keto reductase, putative [Ricinus communis]
12 Hb_115513_030 0.2937166028 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
13 Hb_004524_060 0.2948146323 - - hypothetical protein VITISV_039334 [Vitis vinifera]
14 Hb_004204_180 0.2951168287 - - -
15 Hb_015481_010 0.2959364726 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
16 Hb_003119_030 0.2969340029 - - PREDICTED: classical arabinogalactan protein 1-like [Jatropha curcas]
17 Hb_008203_020 0.2991814713 - - protein kinase, putative [Ricinus communis]
18 Hb_001004_050 0.3035821668 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
19 Hb_114250_010 0.3062683714 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007163_080 0.3082249877 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]

Gene co-expression network

sample Hb_004800_210 Hb_004800_210 Hb_011942_030 Hb_011942_030 Hb_004800_210--Hb_011942_030 Hb_049884_010 Hb_049884_010 Hb_004800_210--Hb_049884_010 Hb_000164_090 Hb_000164_090 Hb_004800_210--Hb_000164_090 Hb_002897_020 Hb_002897_020 Hb_004800_210--Hb_002897_020 Hb_000540_220 Hb_000540_220 Hb_004800_210--Hb_000540_220 Hb_012052_030 Hb_012052_030 Hb_004800_210--Hb_012052_030 Hb_011942_030--Hb_002897_020 Hb_039385_010 Hb_039385_010 Hb_011942_030--Hb_039385_010 Hb_011903_030 Hb_011903_030 Hb_011942_030--Hb_011903_030 Hb_000742_050 Hb_000742_050 Hb_011942_030--Hb_000742_050 Hb_000629_050 Hb_000629_050 Hb_011942_030--Hb_000629_050 Hb_005417_020 Hb_005417_020 Hb_011942_030--Hb_005417_020 Hb_164225_010 Hb_164225_010 Hb_049884_010--Hb_164225_010 Hb_049884_010--Hb_011942_030 Hb_007188_060 Hb_007188_060 Hb_049884_010--Hb_007188_060 Hb_114250_010 Hb_114250_010 Hb_049884_010--Hb_114250_010 Hb_004117_250 Hb_004117_250 Hb_049884_010--Hb_004117_250 Hb_000164_090--Hb_000540_220 Hb_000164_090--Hb_007188_060 Hb_163508_010 Hb_163508_010 Hb_000164_090--Hb_163508_010 Hb_000164_090--Hb_002897_020 Hb_004204_180 Hb_004204_180 Hb_000164_090--Hb_004204_180 Hb_115513_030 Hb_115513_030 Hb_002897_020--Hb_115513_030 Hb_000836_180 Hb_000836_180 Hb_002897_020--Hb_000836_180 Hb_000433_050 Hb_000433_050 Hb_002897_020--Hb_000433_050 Hb_104641_010 Hb_104641_010 Hb_002897_020--Hb_104641_010 Hb_179363_010 Hb_179363_010 Hb_002897_020--Hb_179363_010 Hb_000540_220--Hb_163508_010 Hb_002965_070 Hb_002965_070 Hb_000540_220--Hb_002965_070 Hb_000540_220--Hb_007188_060 Hb_000221_230 Hb_000221_230 Hb_000540_220--Hb_000221_230 Hb_000563_510 Hb_000563_510 Hb_000540_220--Hb_000563_510 Hb_007527_030 Hb_007527_030 Hb_012052_030--Hb_007527_030 Hb_001486_140 Hb_001486_140 Hb_012052_030--Hb_001486_140 Hb_002367_120 Hb_002367_120 Hb_012052_030--Hb_002367_120 Hb_057217_010 Hb_057217_010 Hb_012052_030--Hb_057217_010 Hb_007441_060 Hb_007441_060 Hb_012052_030--Hb_007441_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01714 4.59034 3.09268 0 0 0.418822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.211986 0 0.472401 0

CAGE analysis