Hb_007441_060

Information

Type -
Description -
Location Contig7441: 35078-35416
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56592: 33349-35546 , PASA_asmbl_56593: 35583-37614 , PASA_asmbl_56594: 36329-37591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_060 0.0 - - -
2 Hb_007773_030 0.1523562282 - - -
3 Hb_007885_080 0.1904291533 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
4 Hb_000270_850 0.1953716059 - - conserved hypothetical protein [Ricinus communis]
5 Hb_133636_010 0.2230592706 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
6 Hb_001377_500 0.2265275352 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
7 Hb_000676_030 0.2271291661 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
8 Hb_005157_010 0.2272593235 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
9 Hb_001673_110 0.2290923232 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
10 Hb_022593_030 0.232792889 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_000035_300 0.2394642043 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005147_050 0.2429833902 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
13 Hb_002609_150 0.2436265587 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
14 Hb_006615_040 0.2437079475 - - monoxygenase, putative [Ricinus communis]
15 Hb_151281_010 0.2490345278 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
16 Hb_138628_010 0.250485342 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_012018_010 0.2506620214 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
18 Hb_079955_010 0.2523892325 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
19 Hb_001584_010 0.2533959395 - - kelch repeat protein, putative [Ricinus communis]
20 Hb_116635_010 0.2538063435 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_007441_060 Hb_007441_060 Hb_007773_030 Hb_007773_030 Hb_007441_060--Hb_007773_030 Hb_007885_080 Hb_007885_080 Hb_007441_060--Hb_007885_080 Hb_000270_850 Hb_000270_850 Hb_007441_060--Hb_000270_850 Hb_133636_010 Hb_133636_010 Hb_007441_060--Hb_133636_010 Hb_001377_500 Hb_001377_500 Hb_007441_060--Hb_001377_500 Hb_000676_030 Hb_000676_030 Hb_007441_060--Hb_000676_030 Hb_010578_050 Hb_010578_050 Hb_007773_030--Hb_010578_050 Hb_007773_030--Hb_133636_010 Hb_000035_300 Hb_000035_300 Hb_007773_030--Hb_000035_300 Hb_002783_320 Hb_002783_320 Hb_007773_030--Hb_002783_320 Hb_001584_010 Hb_001584_010 Hb_007773_030--Hb_001584_010 Hb_004724_130 Hb_004724_130 Hb_007885_080--Hb_004724_130 Hb_003525_020 Hb_003525_020 Hb_007885_080--Hb_003525_020 Hb_002035_030 Hb_002035_030 Hb_007885_080--Hb_002035_030 Hb_005147_050 Hb_005147_050 Hb_007885_080--Hb_005147_050 Hb_001122_010 Hb_001122_010 Hb_007885_080--Hb_001122_010 Hb_156850_110 Hb_156850_110 Hb_000270_850--Hb_156850_110 Hb_138628_010 Hb_138628_010 Hb_000270_850--Hb_138628_010 Hb_116635_010 Hb_116635_010 Hb_000270_850--Hb_116635_010 Hb_001218_080 Hb_001218_080 Hb_000270_850--Hb_001218_080 Hb_006615_040 Hb_006615_040 Hb_000270_850--Hb_006615_040 Hb_003299_010 Hb_003299_010 Hb_133636_010--Hb_003299_010 Hb_000844_010 Hb_000844_010 Hb_133636_010--Hb_000844_010 Hb_133636_010--Hb_002783_320 Hb_005157_010 Hb_005157_010 Hb_133636_010--Hb_005157_010 Hb_011909_030 Hb_011909_030 Hb_133636_010--Hb_011909_030 Hb_001195_500 Hb_001195_500 Hb_001377_500--Hb_001195_500 Hb_001377_500--Hb_002035_030 Hb_000000_140 Hb_000000_140 Hb_001377_500--Hb_000000_140 Hb_000608_020 Hb_000608_020 Hb_001377_500--Hb_000608_020 Hb_002609_150 Hb_002609_150 Hb_001377_500--Hb_002609_150 Hb_002272_140 Hb_002272_140 Hb_001377_500--Hb_002272_140 Hb_011791_010 Hb_011791_010 Hb_000676_030--Hb_011791_010 Hb_002621_030 Hb_002621_030 Hb_000676_030--Hb_002621_030 Hb_001073_060 Hb_001073_060 Hb_000676_030--Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_000676_030--Hb_002219_090 Hb_079955_010 Hb_079955_010 Hb_000676_030--Hb_079955_010 Hb_005000_200 Hb_005000_200 Hb_000676_030--Hb_005000_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.352513 2.13157 0.379559 0.259018 0 0.109071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.889615 0

CAGE analysis