Hb_001122_010

Information

Type -
Description -
Location Contig1122: 144-5965
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03681: 5564-10813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001122_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_010270_010 0.1174331074 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_002781_010 0.1295524558 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
4 Hb_000638_150 0.1609991935 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
5 Hb_009913_010 0.1693783943 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
6 Hb_000256_120 0.1744932694 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
7 Hb_039342_010 0.1897090203 - - pyruvate decarboxylase [Hevea brasiliensis]
8 Hb_000083_130 0.1951093568 - - hypothetical protein RCOM_0884570 [Ricinus communis]
9 Hb_001675_010 0.1953709515 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
10 Hb_000840_070 0.1969708364 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_002598_010 0.2021619103 - - sugar transporter, putative [Ricinus communis]
12 Hb_001625_010 0.2025869303 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
13 Hb_004586_240 0.2043608348 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
14 Hb_001251_060 0.2046185411 - - aldo/keto reductase AKR [Manihot esculenta]
15 Hb_159411_010 0.2095152753 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
16 Hb_001799_190 0.2118661728 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
17 Hb_001277_040 0.2118872207 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
18 Hb_000863_030 0.2123768239 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
19 Hb_001091_030 0.2124938101 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
20 Hb_000000_240 0.2147917543 - - PREDICTED: protein LYK5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001122_010 Hb_001122_010 Hb_010270_010 Hb_010270_010 Hb_001122_010--Hb_010270_010 Hb_002781_010 Hb_002781_010 Hb_001122_010--Hb_002781_010 Hb_000638_150 Hb_000638_150 Hb_001122_010--Hb_000638_150 Hb_009913_010 Hb_009913_010 Hb_001122_010--Hb_009913_010 Hb_000256_120 Hb_000256_120 Hb_001122_010--Hb_000256_120 Hb_039342_010 Hb_039342_010 Hb_001122_010--Hb_039342_010 Hb_010270_010--Hb_039342_010 Hb_010270_010--Hb_002781_010 Hb_001675_010 Hb_001675_010 Hb_010270_010--Hb_001675_010 Hb_001799_190 Hb_001799_190 Hb_010270_010--Hb_001799_190 Hb_011716_110 Hb_011716_110 Hb_010270_010--Hb_011716_110 Hb_002781_010--Hb_001675_010 Hb_004586_240 Hb_004586_240 Hb_002781_010--Hb_004586_240 Hb_001625_010 Hb_001625_010 Hb_002781_010--Hb_001625_010 Hb_000840_070 Hb_000840_070 Hb_002781_010--Hb_000840_070 Hb_000638_150--Hb_000256_120 Hb_000661_280 Hb_000661_280 Hb_000638_150--Hb_000661_280 Hb_001277_040 Hb_001277_040 Hb_000638_150--Hb_001277_040 Hb_000638_150--Hb_010270_010 Hb_009710_020 Hb_009710_020 Hb_000638_150--Hb_009710_020 Hb_005147_050 Hb_005147_050 Hb_009913_010--Hb_005147_050 Hb_000083_130 Hb_000083_130 Hb_009913_010--Hb_000083_130 Hb_001103_040 Hb_001103_040 Hb_009913_010--Hb_001103_040 Hb_009913_010--Hb_010270_010 Hb_001091_030 Hb_001091_030 Hb_009913_010--Hb_001091_030 Hb_000256_120--Hb_010270_010 Hb_000256_120--Hb_009710_020 Hb_000256_120--Hb_002781_010 Hb_000242_030 Hb_000242_030 Hb_000256_120--Hb_000242_030 Hb_144096_010 Hb_144096_010 Hb_039342_010--Hb_144096_010 Hb_008221_170 Hb_008221_170 Hb_039342_010--Hb_008221_170 Hb_000371_060 Hb_000371_060 Hb_039342_010--Hb_000371_060 Hb_007426_140 Hb_007426_140 Hb_039342_010--Hb_007426_140 Hb_000215_100 Hb_000215_100 Hb_039342_010--Hb_000215_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63813 4.56377 1.689 2.41589 0.212996 0.881695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.159482 0.143411 0.373849 4.20818 0.378755

CAGE analysis