Hb_001103_040

Information

Type -
Description -
Location Contig1103: 41618-52112
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11170g
description hypothetical protein
nr
ID XP_006376230.1
description hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
swissprot
ID Q9M390
description Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana GN=NPF8.1 PE=1 SV=1
trembl
ID U5FXL8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11170g PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03201: 32072-50590 , PASA_asmbl_03202: 32072-50590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001103_040 0.0 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
2 Hb_000189_490 0.1416712053 - - Sulfate/thiosulfate import ATP-binding protein cysA [Theobroma cacao]
3 Hb_011382_050 0.1849908597 - - hypothetical protein PRUPE_ppa025935mg [Prunus persica]
4 Hb_003442_010 0.1894055227 - - PREDICTED: structural maintenance of chromosomes protein 4-like isoform X2 [Citrus sinensis]
5 Hb_083493_020 0.1994839966 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
6 Hb_027506_050 0.2050022358 - - -
7 Hb_009913_010 0.2105247823 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
8 Hb_000586_060 0.2159240474 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
9 Hb_011218_050 0.2164089585 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_003384_070 0.2183857396 - - PREDICTED: methylesterase 17-like [Populus euphratica]
11 Hb_101089_010 0.2264252854 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
12 Hb_001481_020 0.2274136547 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
13 Hb_000803_100 0.2292457782 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
14 Hb_000017_150 0.230785673 - - hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
15 Hb_004837_170 0.2334436612 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
16 Hb_031954_010 0.2355013941 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_140848_010 0.2361956098 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
18 Hb_002326_080 0.2372663498 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
19 Hb_000844_010 0.2384268827 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
20 Hb_010253_020 0.2400726625 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001103_040 Hb_001103_040 Hb_000189_490 Hb_000189_490 Hb_001103_040--Hb_000189_490 Hb_011382_050 Hb_011382_050 Hb_001103_040--Hb_011382_050 Hb_003442_010 Hb_003442_010 Hb_001103_040--Hb_003442_010 Hb_083493_020 Hb_083493_020 Hb_001103_040--Hb_083493_020 Hb_027506_050 Hb_027506_050 Hb_001103_040--Hb_027506_050 Hb_009913_010 Hb_009913_010 Hb_001103_040--Hb_009913_010 Hb_031954_010 Hb_031954_010 Hb_000189_490--Hb_031954_010 Hb_000189_490--Hb_003442_010 Hb_004341_010 Hb_004341_010 Hb_000189_490--Hb_004341_010 Hb_001283_010 Hb_001283_010 Hb_000189_490--Hb_001283_010 Hb_000365_290 Hb_000365_290 Hb_000189_490--Hb_000365_290 Hb_003384_070 Hb_003384_070 Hb_011382_050--Hb_003384_070 Hb_000017_150 Hb_000017_150 Hb_011382_050--Hb_000017_150 Hb_101089_010 Hb_101089_010 Hb_011382_050--Hb_101089_010 Hb_141142_010 Hb_141142_010 Hb_011382_050--Hb_141142_010 Hb_004611_060 Hb_004611_060 Hb_011382_050--Hb_004611_060 Hb_001481_020 Hb_001481_020 Hb_003442_010--Hb_001481_020 Hb_183820_010 Hb_183820_010 Hb_003442_010--Hb_183820_010 Hb_003442_010--Hb_000365_290 Hb_003442_010--Hb_083493_020 Hb_004242_070 Hb_004242_070 Hb_083493_020--Hb_004242_070 Hb_083493_020--Hb_000189_490 Hb_002400_370 Hb_002400_370 Hb_083493_020--Hb_002400_370 Hb_157263_010 Hb_157263_010 Hb_083493_020--Hb_157263_010 Hb_011218_050 Hb_011218_050 Hb_027506_050--Hb_011218_050 Hb_027506_050--Hb_083493_020 Hb_027506_050--Hb_000189_490 Hb_000586_060 Hb_000586_060 Hb_027506_050--Hb_000586_060 Hb_027506_050--Hb_003442_010 Hb_001122_010 Hb_001122_010 Hb_009913_010--Hb_001122_010 Hb_005147_050 Hb_005147_050 Hb_009913_010--Hb_005147_050 Hb_000083_130 Hb_000083_130 Hb_009913_010--Hb_000083_130 Hb_010270_010 Hb_010270_010 Hb_009913_010--Hb_010270_010 Hb_001091_030 Hb_001091_030 Hb_009913_010--Hb_001091_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.86978 2.77508 0.0718641 1.87077 0.140959 0.0923687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0474805 0.0186792 0 2.16351 0

CAGE analysis