Hb_004611_060

Information

Type -
Description -
Location Contig4611: 64813-78447
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa027090mg
description hypothetical protein
nr
ID KDP35941.1
description hypothetical protein JCGZ_09913 [Jatropha curcas]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A067KI84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09913 PE=4 SV=1
Gene Ontology
ID GO:0003824
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004611_060 0.0 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
2 Hb_000699_190 0.1868452927 - - unknown [Populus trichocarpa]
3 Hb_070541_030 0.1893296123 - - -
4 Hb_000936_040 0.1943996628 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
5 Hb_187697_010 0.214102145 - - TMV resistance protein N, putative [Ricinus communis]
6 Hb_035761_010 0.2277272305 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_011382_050 0.2278536734 - - hypothetical protein PRUPE_ppa025935mg [Prunus persica]
8 Hb_000342_140 0.2294483491 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
9 Hb_008092_030 0.2312452923 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
10 Hb_001103_070 0.2350967976 - - Patellin-3, putative [Ricinus communis]
11 Hb_048944_020 0.2355838044 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
12 Hb_042553_010 0.2358707618 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
13 Hb_004453_180 0.2419803141 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
14 Hb_007137_030 0.24219029 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
15 Hb_000431_030 0.2460859778 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
16 Hb_001131_070 0.2465813115 - - PREDICTED: uncharacterized protein LOC105638217 [Jatropha curcas]
17 Hb_003637_020 0.2489431927 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000483_230 0.2489756339 - - PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Jatropha curcas]
19 Hb_000207_420 0.2493888467 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
20 Hb_049958_010 0.2495822437 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_004611_060 Hb_004611_060 Hb_000699_190 Hb_000699_190 Hb_004611_060--Hb_000699_190 Hb_070541_030 Hb_070541_030 Hb_004611_060--Hb_070541_030 Hb_000936_040 Hb_000936_040 Hb_004611_060--Hb_000936_040 Hb_187697_010 Hb_187697_010 Hb_004611_060--Hb_187697_010 Hb_035761_010 Hb_035761_010 Hb_004611_060--Hb_035761_010 Hb_011382_050 Hb_011382_050 Hb_004611_060--Hb_011382_050 Hb_042553_010 Hb_042553_010 Hb_000699_190--Hb_042553_010 Hb_001131_070 Hb_001131_070 Hb_000699_190--Hb_001131_070 Hb_000699_190--Hb_187697_010 Hb_073096_010 Hb_073096_010 Hb_000699_190--Hb_073096_010 Hb_007137_030 Hb_007137_030 Hb_000699_190--Hb_007137_030 Hb_001103_070 Hb_001103_070 Hb_070541_030--Hb_001103_070 Hb_145317_010 Hb_145317_010 Hb_070541_030--Hb_145317_010 Hb_000732_240 Hb_000732_240 Hb_070541_030--Hb_000732_240 Hb_070541_030--Hb_035761_010 Hb_186304_010 Hb_186304_010 Hb_070541_030--Hb_186304_010 Hb_009476_150 Hb_009476_150 Hb_000936_040--Hb_009476_150 Hb_000438_150 Hb_000438_150 Hb_000936_040--Hb_000438_150 Hb_048944_020 Hb_048944_020 Hb_000936_040--Hb_048944_020 Hb_000936_040--Hb_035761_010 Hb_049958_010 Hb_049958_010 Hb_000936_040--Hb_049958_010 Hb_000003_430 Hb_000003_430 Hb_187697_010--Hb_000003_430 Hb_000029_280 Hb_000029_280 Hb_187697_010--Hb_000029_280 Hb_000506_130 Hb_000506_130 Hb_187697_010--Hb_000506_130 Hb_127628_010 Hb_127628_010 Hb_187697_010--Hb_127628_010 Hb_008725_190 Hb_008725_190 Hb_187697_010--Hb_008725_190 Hb_003913_030 Hb_003913_030 Hb_187697_010--Hb_003913_030 Hb_000099_190 Hb_000099_190 Hb_035761_010--Hb_000099_190 Hb_035761_010--Hb_000732_240 Hb_187021_010 Hb_187021_010 Hb_035761_010--Hb_187021_010 Hb_101370_010 Hb_101370_010 Hb_035761_010--Hb_101370_010 Hb_154538_010 Hb_154538_010 Hb_035761_010--Hb_154538_010 Hb_035761_010--Hb_048944_020 Hb_003384_070 Hb_003384_070 Hb_011382_050--Hb_003384_070 Hb_000017_150 Hb_000017_150 Hb_011382_050--Hb_000017_150 Hb_101089_010 Hb_101089_010 Hb_011382_050--Hb_101089_010 Hb_001103_040 Hb_001103_040 Hb_011382_050--Hb_001103_040 Hb_141142_010 Hb_141142_010 Hb_011382_050--Hb_141142_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0066809 0.0784734 0.0073999 0.0614337 0.00937537 0.0203918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0141223 0

CAGE analysis