Hb_000099_190

Information

Type -
Description -
Location Contig99: 221512-227304
Sequence    

Annotation

kegg
ID rcu:RCOM_1689410
description ATP binding protein, putative (EC:3.6.4.3)
nr
ID XP_012086803.1
description PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
swissprot
ID Q9P7J5
description Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC24B10.10c PE=3 SV=1
trembl
ID B9RCJ8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1689410 PE=3 SV=1
Gene Ontology
ID GO:0005524
description cell division cycle atpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64746: 221108-222916 , PASA_asmbl_64747: 223468-225250 , PASA_asmbl_64748: 225339-227536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_190 0.0 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
2 Hb_000732_240 0.1120752763 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
3 Hb_035761_010 0.1334872869 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_049915_010 0.1733613244 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
5 Hb_000438_150 0.1757987766 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
6 Hb_000914_050 0.1761930174 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
7 Hb_001103_070 0.1762000915 - - Patellin-3, putative [Ricinus communis]
8 Hb_187021_010 0.1866457876 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_160405_010 0.188411303 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_145317_010 0.1901131905 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
11 Hb_154538_010 0.1950645155 - - -
12 Hb_000094_190 0.197431522 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
13 Hb_002675_090 0.1975482118 - - conserved hypothetical protein [Ricinus communis]
14 Hb_101370_010 0.1981582655 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_001754_060 0.2009908496 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
16 Hb_066514_010 0.2029901216 - - hypothetical protein RCOM_0204720 [Ricinus communis]
17 Hb_017159_010 0.2037365967 - - -
18 Hb_009476_150 0.2094547177 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
19 Hb_005656_160 0.2096737749 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]
20 Hb_000733_090 0.2104205816 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]

Gene co-expression network

sample Hb_000099_190 Hb_000099_190 Hb_000732_240 Hb_000732_240 Hb_000099_190--Hb_000732_240 Hb_035761_010 Hb_035761_010 Hb_000099_190--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000099_190--Hb_049915_010 Hb_000438_150 Hb_000438_150 Hb_000099_190--Hb_000438_150 Hb_000914_050 Hb_000914_050 Hb_000099_190--Hb_000914_050 Hb_001103_070 Hb_001103_070 Hb_000099_190--Hb_001103_070 Hb_101370_010 Hb_101370_010 Hb_000732_240--Hb_101370_010 Hb_000732_240--Hb_035761_010 Hb_000732_240--Hb_049915_010 Hb_017159_010 Hb_017159_010 Hb_000732_240--Hb_017159_010 Hb_001357_280 Hb_001357_280 Hb_000732_240--Hb_001357_280 Hb_187021_010 Hb_187021_010 Hb_035761_010--Hb_187021_010 Hb_035761_010--Hb_101370_010 Hb_154538_010 Hb_154538_010 Hb_035761_010--Hb_154538_010 Hb_048944_020 Hb_048944_020 Hb_035761_010--Hb_048944_020 Hb_000733_090 Hb_000733_090 Hb_049915_010--Hb_000733_090 Hb_008406_030 Hb_008406_030 Hb_049915_010--Hb_008406_030 Hb_004297_080 Hb_004297_080 Hb_049915_010--Hb_004297_080 Hb_008643_020 Hb_008643_020 Hb_049915_010--Hb_008643_020 Hb_000172_230 Hb_000172_230 Hb_049915_010--Hb_000172_230 Hb_002783_210 Hb_002783_210 Hb_049915_010--Hb_002783_210 Hb_009476_150 Hb_009476_150 Hb_000438_150--Hb_009476_150 Hb_000438_150--Hb_000732_240 Hb_000438_150--Hb_048944_020 Hb_002196_010 Hb_002196_010 Hb_000438_150--Hb_002196_010 Hb_007157_060 Hb_007157_060 Hb_000438_150--Hb_007157_060 Hb_003102_030 Hb_003102_030 Hb_000914_050--Hb_003102_030 Hb_007044_160 Hb_007044_160 Hb_000914_050--Hb_007044_160 Hb_002026_020 Hb_002026_020 Hb_000914_050--Hb_002026_020 Hb_002374_550 Hb_002374_550 Hb_000914_050--Hb_002374_550 Hb_000094_190 Hb_000094_190 Hb_000914_050--Hb_000094_190 Hb_005941_030 Hb_005941_030 Hb_000914_050--Hb_005941_030 Hb_001103_070--Hb_000732_240 Hb_001004_120 Hb_001004_120 Hb_001103_070--Hb_001004_120 Hb_145317_010 Hb_145317_010 Hb_001103_070--Hb_145317_010 Hb_160405_010 Hb_160405_010 Hb_001103_070--Hb_160405_010 Hb_003082_040 Hb_003082_040 Hb_001103_070--Hb_003082_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77603 5.07954 2.11327 10.8646 1.15656 1.38034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136259 0.147429 0.230113 0.50017 0.655739

CAGE analysis