Hb_001357_280

Information

Type -
Description -
Location Contig1357: 218439-219794
Sequence    

Annotation

kegg
ID rcu:RCOM_1303640
description Mitogen-activated protein kinase kinase kinase, putative (EC:2.7.11.25)
nr
ID XP_002529924.1
description Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
swissprot
ID Q9FZ36
description Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1
trembl
ID B9SVA5
description Mitogen-activated protein kinase kinase kinase, putative OS=Ricinus communis GN=RCOM_1303640 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase npk1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_280 0.0 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
2 Hb_000532_150 0.1570187393 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
3 Hb_017159_010 0.1616032577 - - -
4 Hb_000594_110 0.1646204768 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
5 Hb_000732_240 0.1683535814 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
6 Hb_000284_170 0.1709276594 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
7 Hb_002250_050 0.1717433842 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
8 Hb_001255_010 0.1774967125 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
9 Hb_009476_150 0.1833800248 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
10 Hb_041895_040 0.183480127 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001472_140 0.1843850025 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
12 Hb_005714_100 0.1880037707 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
13 Hb_001269_090 0.1924988272 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
14 Hb_012258_020 0.195102267 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_012743_010 0.197568227 - - phosphate transporter [Manihot esculenta]
16 Hb_001329_080 0.2005930341 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
17 Hb_020967_010 0.2017022987 - - -
18 Hb_033327_010 0.2028748886 - - SYM8 [Pisum sativum]
19 Hb_102437_010 0.2037531437 - - PREDICTED: B-cell receptor-associated protein 31 [Beta vulgaris subsp. vulgaris]
20 Hb_008112_010 0.2046506679 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_280 Hb_001357_280 Hb_000532_150 Hb_000532_150 Hb_001357_280--Hb_000532_150 Hb_017159_010 Hb_017159_010 Hb_001357_280--Hb_017159_010 Hb_000594_110 Hb_000594_110 Hb_001357_280--Hb_000594_110 Hb_000732_240 Hb_000732_240 Hb_001357_280--Hb_000732_240 Hb_000284_170 Hb_000284_170 Hb_001357_280--Hb_000284_170 Hb_002250_050 Hb_002250_050 Hb_001357_280--Hb_002250_050 Hb_001514_250 Hb_001514_250 Hb_000532_150--Hb_001514_250 Hb_001269_090 Hb_001269_090 Hb_000532_150--Hb_001269_090 Hb_012743_010 Hb_012743_010 Hb_000532_150--Hb_012743_010 Hb_000532_150--Hb_000284_170 Hb_113676_010 Hb_113676_010 Hb_000532_150--Hb_113676_010 Hb_000172_230 Hb_000172_230 Hb_000532_150--Hb_000172_230 Hb_017159_010--Hb_002250_050 Hb_001754_060 Hb_001754_060 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_001255_010 Hb_001255_010 Hb_017159_010--Hb_001255_010 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_041895_040 Hb_041895_040 Hb_000594_110--Hb_041895_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_033327_010 Hb_033327_010 Hb_000594_110--Hb_033327_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080 Hb_000099_190 Hb_000099_190 Hb_000732_240--Hb_000099_190 Hb_101370_010 Hb_101370_010 Hb_000732_240--Hb_101370_010 Hb_035761_010 Hb_035761_010 Hb_000732_240--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000732_240--Hb_049915_010 Hb_000732_240--Hb_017159_010 Hb_000284_170--Hb_033327_010 Hb_001472_140 Hb_001472_140 Hb_000284_170--Hb_001472_140 Hb_000284_170--Hb_000594_110 Hb_005048_120 Hb_005048_120 Hb_000284_170--Hb_005048_120 Hb_094437_050 Hb_094437_050 Hb_000284_170--Hb_094437_050 Hb_002250_050--Hb_001255_010 Hb_000523_030 Hb_000523_030 Hb_002250_050--Hb_000523_030 Hb_003305_030 Hb_003305_030 Hb_002250_050--Hb_003305_030 Hb_004837_050 Hb_004837_050 Hb_002250_050--Hb_004837_050 Hb_009247_010 Hb_009247_010 Hb_002250_050--Hb_009247_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.471847 2.13635 1.49885 2.59021 0.0761365 0.539391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.280875 0.138099 0 0.209781 0.345134

CAGE analysis