Hb_001514_250

Information

Type -
Description -
Location Contig1514: 245950-246387
Sequence    

Annotation

kegg
ID rcu:RCOM_1588210
description GAST1 protein precursor, putative
nr
ID XP_002510126.1
description GAST1 protein precursor, putative [Ricinus communis]
swissprot
ID Q948Z4
description Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1
trembl
ID B9R733
description GAST1 protein, putative OS=Ricinus communis GN=RCOM_1588210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12849: 245741-246432
cDNA
(Sanger)
(ID:Location)		 007_J01.ab1: 245745-246432

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001514_250 0.0 - - GAST1 protein precursor, putative [Ricinus communis]
2 Hb_000532_150 0.1347153499 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
3 Hb_007163_050 0.1622553959 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
4 Hb_000139_050 0.1649855247 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
5 Hb_062226_150 0.167962576 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_002026_050 0.1720533076 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
7 Hb_000300_190 0.1821428099 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
8 Hb_002048_100 0.1843143642 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Jatropha curcas]
9 Hb_003119_040 0.1850255 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
10 Hb_001541_190 0.1857106733 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
11 Hb_003992_280 0.1883811381 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
12 Hb_001633_160 0.1920252206 - - PREDICTED: zerumbone synthase-like isoform X2 [Jatropha curcas]
13 Hb_001459_040 0.1946907303 - - Ankyrin repeat-containing protein [Medicago truncatula]
14 Hb_000161_180 0.195247334 - - Protein argonaute 2 [Morus notabilis]
15 Hb_000163_040 0.1952825518 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
16 Hb_000175_300 0.1955531338 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
17 Hb_002965_060 0.1981829634 - - Protein COBRA precursor, putative [Ricinus communis]
18 Hb_003667_020 0.198477702 - - conserved hypothetical protein 16 [Hevea brasiliensis]
19 Hb_000030_020 0.1994418958 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
20 Hb_000010_220 0.201424566 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]

Gene co-expression network

sample Hb_001514_250 Hb_001514_250 Hb_000532_150 Hb_000532_150 Hb_001514_250--Hb_000532_150 Hb_007163_050 Hb_007163_050 Hb_001514_250--Hb_007163_050 Hb_000139_050 Hb_000139_050 Hb_001514_250--Hb_000139_050 Hb_062226_150 Hb_062226_150 Hb_001514_250--Hb_062226_150 Hb_002026_050 Hb_002026_050 Hb_001514_250--Hb_002026_050 Hb_000300_190 Hb_000300_190 Hb_001514_250--Hb_000300_190 Hb_001269_090 Hb_001269_090 Hb_000532_150--Hb_001269_090 Hb_012743_010 Hb_012743_010 Hb_000532_150--Hb_012743_010 Hb_000284_170 Hb_000284_170 Hb_000532_150--Hb_000284_170 Hb_113676_010 Hb_113676_010 Hb_000532_150--Hb_113676_010 Hb_000172_230 Hb_000172_230 Hb_000532_150--Hb_000172_230 Hb_188281_010 Hb_188281_010 Hb_007163_050--Hb_188281_010 Hb_007749_020 Hb_007749_020 Hb_007163_050--Hb_007749_020 Hb_007163_050--Hb_002026_050 Hb_000163_040 Hb_000163_040 Hb_007163_050--Hb_000163_040 Hb_000563_140 Hb_000563_140 Hb_007163_050--Hb_000563_140 Hb_036029_020 Hb_036029_020 Hb_000139_050--Hb_036029_020 Hb_029576_070 Hb_029576_070 Hb_000139_050--Hb_029576_070 Hb_002597_030 Hb_002597_030 Hb_000139_050--Hb_002597_030 Hb_000010_220 Hb_000010_220 Hb_000139_050--Hb_000010_220 Hb_001677_190 Hb_001677_190 Hb_000139_050--Hb_001677_190 Hb_017549_010 Hb_017549_010 Hb_000139_050--Hb_017549_010 Hb_000247_140 Hb_000247_140 Hb_062226_150--Hb_000247_140 Hb_005408_080 Hb_005408_080 Hb_062226_150--Hb_005408_080 Hb_002400_040 Hb_002400_040 Hb_062226_150--Hb_002400_040 Hb_012272_010 Hb_012272_010 Hb_062226_150--Hb_012272_010 Hb_182970_010 Hb_182970_010 Hb_062226_150--Hb_182970_010 Hb_021576_160 Hb_021576_160 Hb_062226_150--Hb_021576_160 Hb_004109_210 Hb_004109_210 Hb_002026_050--Hb_004109_210 Hb_000365_280 Hb_000365_280 Hb_002026_050--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_002026_050--Hb_002893_030 Hb_001059_110 Hb_001059_110 Hb_002026_050--Hb_001059_110 Hb_002026_050--Hb_005408_080 Hb_003992_280 Hb_003992_280 Hb_000300_190--Hb_003992_280 Hb_003055_080 Hb_003055_080 Hb_000300_190--Hb_003055_080 Hb_002965_060 Hb_002965_060 Hb_000300_190--Hb_002965_060 Hb_006120_130 Hb_006120_130 Hb_000300_190--Hb_006120_130 Hb_002639_050 Hb_002639_050 Hb_000300_190--Hb_002639_050 Hb_000375_260 Hb_000375_260 Hb_000300_190--Hb_000375_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5116 65.9577 129.898 159.198 4.61494 1.83594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5923 8.88669 2.38794 5.7547 9.68097

CAGE analysis