Hb_062226_150

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig62226: 97763-100660
Sequence    

Annotation

kegg
ID rcu:RCOM_1482450
description hypothetical protein
nr
ID XP_002524239.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W4J9
description Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2
trembl
ID B9SE20
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1482450 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance protein rpp8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51609: 96944-100686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062226_150 0.0 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
2 Hb_000247_140 0.1069700656 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
3 Hb_005408_080 0.1427066518 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
4 Hb_002400_040 0.1442397065 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
5 Hb_012272_010 0.1553515712 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_182970_010 0.159828099 - - calmodulin-binding protein 60-D [Populus trichocarpa]
7 Hb_021576_160 0.159915152 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
8 Hb_003209_090 0.1607794912 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
9 Hb_000077_160 0.1625744558 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
10 Hb_005245_140 0.163574957 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
11 Hb_000047_010 0.1637190061 - - PREDICTED: expansin-like A1 [Jatropha curcas]
12 Hb_000186_320 0.1678748481 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_001514_250 0.167962576 - - GAST1 protein precursor, putative [Ricinus communis]
14 Hb_004109_110 0.1696226834 - - dioxygenase family protein [Populus trichocarpa]
15 Hb_007904_290 0.1712480972 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
16 Hb_002026_050 0.1712599467 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
17 Hb_000284_170 0.1743443679 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
18 Hb_089305_010 0.1780637384 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
19 Hb_000418_060 0.1786293742 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
20 Hb_008406_070 0.1798503727 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]

Gene co-expression network

sample Hb_062226_150 Hb_062226_150 Hb_000247_140 Hb_000247_140 Hb_062226_150--Hb_000247_140 Hb_005408_080 Hb_005408_080 Hb_062226_150--Hb_005408_080 Hb_002400_040 Hb_002400_040 Hb_062226_150--Hb_002400_040 Hb_012272_010 Hb_012272_010 Hb_062226_150--Hb_012272_010 Hb_182970_010 Hb_182970_010 Hb_062226_150--Hb_182970_010 Hb_021576_160 Hb_021576_160 Hb_062226_150--Hb_021576_160 Hb_003747_250 Hb_003747_250 Hb_000247_140--Hb_003747_250 Hb_008406_070 Hb_008406_070 Hb_000247_140--Hb_008406_070 Hb_003581_050 Hb_003581_050 Hb_000247_140--Hb_003581_050 Hb_000563_630 Hb_000563_630 Hb_000247_140--Hb_000563_630 Hb_008749_010 Hb_008749_010 Hb_000247_140--Hb_008749_010 Hb_005408_080--Hb_002400_040 Hb_000892_030 Hb_000892_030 Hb_005408_080--Hb_000892_030 Hb_094437_050 Hb_094437_050 Hb_005408_080--Hb_094437_050 Hb_000110_260 Hb_000110_260 Hb_005408_080--Hb_000110_260 Hb_005725_280 Hb_005725_280 Hb_005408_080--Hb_005725_280 Hb_001329_080 Hb_001329_080 Hb_005408_080--Hb_001329_080 Hb_000047_010 Hb_000047_010 Hb_002400_040--Hb_000047_010 Hb_002400_040--Hb_000892_030 Hb_002400_040--Hb_094437_050 Hb_002400_040--Hb_182970_010 Hb_004109_110 Hb_004109_110 Hb_002400_040--Hb_004109_110 Hb_005048_120 Hb_005048_120 Hb_012272_010--Hb_005048_120 Hb_010721_010 Hb_010721_010 Hb_012272_010--Hb_010721_010 Hb_007904_290 Hb_007904_290 Hb_012272_010--Hb_007904_290 Hb_001019_020 Hb_001019_020 Hb_012272_010--Hb_001019_020 Hb_001189_150 Hb_001189_150 Hb_012272_010--Hb_001189_150 Hb_002936_030 Hb_002936_030 Hb_012272_010--Hb_002936_030 Hb_003633_150 Hb_003633_150 Hb_182970_010--Hb_003633_150 Hb_182970_010--Hb_001329_080 Hb_001226_170 Hb_001226_170 Hb_182970_010--Hb_001226_170 Hb_003209_090 Hb_003209_090 Hb_182970_010--Hb_003209_090 Hb_182970_010--Hb_005408_080 Hb_003427_020 Hb_003427_020 Hb_021576_160--Hb_003427_020 Hb_001221_050 Hb_001221_050 Hb_021576_160--Hb_001221_050 Hb_006153_020 Hb_006153_020 Hb_021576_160--Hb_006153_020 Hb_001333_030 Hb_001333_030 Hb_021576_160--Hb_001333_030 Hb_005946_200 Hb_005946_200 Hb_021576_160--Hb_005946_200 Hb_029622_090 Hb_029622_090 Hb_021576_160--Hb_029622_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.771797 24.1272 28.633 37.6552 0.0257298 0.256678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.46491 3.05854 0.0226636 2.38909 9.07431

CAGE analysis