Hb_003209_090

Information

Type -
Description -
Location Contig3209: 59741-60997
Sequence    

Annotation

kegg
ID tcc:TCM_038918
description Xyloglucan endotransglucosylase/hydrolase family protein
nr
ID XP_007014171.1
description Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
swissprot
ID Q38910
description Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1
trembl
ID A0A061GPN2
description Xyloglucan endotransglucosylase/hydrolase OS=Theobroma cacao GN=TCM_038918 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33926: 59740-60982
cDNA
(Sanger)
(ID:Location)		 024_O23.ab1: 60048-60982 , 028_M19.ab1: 59740-59889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_090 0.0 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
2 Hb_000371_120 0.1317712903 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
3 Hb_182970_010 0.1328326312 - - calmodulin-binding protein 60-D [Populus trichocarpa]
4 Hb_097634_010 0.1339297618 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
5 Hb_002400_040 0.1352685729 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
6 Hb_004241_200 0.1370965887 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
7 Hb_000077_160 0.1436185522 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
8 Hb_008406_030 0.1508324032 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
9 Hb_005408_080 0.1540204221 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
10 Hb_000892_030 0.155770839 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_062226_150 0.1607794912 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_009189_050 0.1659989604 - - PREDICTED: uncharacterized protein LOC105648080 [Jatropha curcas]
13 Hb_009557_050 0.1660642022 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
14 Hb_004450_030 0.1668246608 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000120_090 0.1690866205 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
16 Hb_004109_110 0.1745690165 - - dioxygenase family protein [Populus trichocarpa]
17 Hb_000521_100 0.1750464262 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001213_030 0.177106679 - - PAR1 protein [Theobroma cacao]
19 Hb_000638_180 0.1781183557 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
20 Hb_013405_100 0.1783152574 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003209_090 Hb_003209_090 Hb_000371_120 Hb_000371_120 Hb_003209_090--Hb_000371_120 Hb_182970_010 Hb_182970_010 Hb_003209_090--Hb_182970_010 Hb_097634_010 Hb_097634_010 Hb_003209_090--Hb_097634_010 Hb_002400_040 Hb_002400_040 Hb_003209_090--Hb_002400_040 Hb_004241_200 Hb_004241_200 Hb_003209_090--Hb_004241_200 Hb_000077_160 Hb_000077_160 Hb_003209_090--Hb_000077_160 Hb_009189_050 Hb_009189_050 Hb_000371_120--Hb_009189_050 Hb_000371_120--Hb_000077_160 Hb_001102_200 Hb_001102_200 Hb_000371_120--Hb_001102_200 Hb_005408_080 Hb_005408_080 Hb_000371_120--Hb_005408_080 Hb_001474_050 Hb_001474_050 Hb_000371_120--Hb_001474_050 Hb_003633_150 Hb_003633_150 Hb_182970_010--Hb_003633_150 Hb_182970_010--Hb_002400_040 Hb_001329_080 Hb_001329_080 Hb_182970_010--Hb_001329_080 Hb_001226_170 Hb_001226_170 Hb_182970_010--Hb_001226_170 Hb_182970_010--Hb_005408_080 Hb_000892_030 Hb_000892_030 Hb_097634_010--Hb_000892_030 Hb_010417_110 Hb_010417_110 Hb_097634_010--Hb_010417_110 Hb_010174_200 Hb_010174_200 Hb_097634_010--Hb_010174_200 Hb_000567_110 Hb_000567_110 Hb_097634_010--Hb_000567_110 Hb_004109_110 Hb_004109_110 Hb_097634_010--Hb_004109_110 Hb_000638_180 Hb_000638_180 Hb_097634_010--Hb_000638_180 Hb_002400_040--Hb_005408_080 Hb_000047_010 Hb_000047_010 Hb_002400_040--Hb_000047_010 Hb_002400_040--Hb_000892_030 Hb_094437_050 Hb_094437_050 Hb_002400_040--Hb_094437_050 Hb_002400_040--Hb_004109_110 Hb_008406_030 Hb_008406_030 Hb_004241_200--Hb_008406_030 Hb_003209_040 Hb_003209_040 Hb_004241_200--Hb_003209_040 Hb_001195_650 Hb_001195_650 Hb_004241_200--Hb_001195_650 Hb_004241_200--Hb_000638_180 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110 Hb_000923_100 Hb_000923_100 Hb_000077_160--Hb_000923_100 Hb_003849_190 Hb_003849_190 Hb_000077_160--Hb_003849_190 Hb_000028_430 Hb_000028_430 Hb_000077_160--Hb_000028_430 Hb_000110_260 Hb_000110_260 Hb_000077_160--Hb_000110_260 Hb_002078_290 Hb_002078_290 Hb_000077_160--Hb_002078_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29642 36.4077 19.1664 40.2012 0.0565132 0.0610351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46009 4.26758 2.00689 2.22122 15.0256

CAGE analysis