Hb_000077_160

Information

Type -
Description -
Location Contig77: 134055-134973
Sequence    

Annotation

kegg
ID tcc:TCM_008102
description Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
nr
ID XP_007043592.1
description Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EAV9
description Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative OS=Theobroma cacao GN=TCM_008102 PE=4 SV=1
Gene Ontology
ID GO:0016740
description Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57588: 134066-135063
cDNA
(Sanger)
(ID:Location)		 036_D18.ab1: 134750-135022 , 045_J10.ab1: 134066-134879

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_160 0.0 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
2 Hb_000923_100 0.1306295554 - - chloride channel clc, putative [Ricinus communis]
3 Hb_000371_120 0.1311305197 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
4 Hb_003849_190 0.1344381702 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
5 Hb_000028_430 0.1356668964 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
6 Hb_000110_260 0.1367379957 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
7 Hb_002078_290 0.1384697481 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
8 Hb_001621_050 0.1394722995 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
9 Hb_005408_080 0.139571525 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
10 Hb_001102_200 0.143064947 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
11 Hb_003209_090 0.1436185522 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
12 Hb_005054_020 0.1457014628 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
13 Hb_031022_020 0.1528927467 - - -
14 Hb_091318_010 0.1536191731 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
15 Hb_000336_180 0.1551889769 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002325_060 0.1570029845 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
17 Hb_089305_010 0.1571480987 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
18 Hb_005725_280 0.1584727635 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
19 Hb_062226_150 0.1625744558 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
20 Hb_000120_090 0.1627752303 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000077_160 Hb_000077_160 Hb_000923_100 Hb_000923_100 Hb_000077_160--Hb_000923_100 Hb_000371_120 Hb_000371_120 Hb_000077_160--Hb_000371_120 Hb_003849_190 Hb_003849_190 Hb_000077_160--Hb_003849_190 Hb_000028_430 Hb_000028_430 Hb_000077_160--Hb_000028_430 Hb_000110_260 Hb_000110_260 Hb_000077_160--Hb_000110_260 Hb_002078_290 Hb_002078_290 Hb_000077_160--Hb_002078_290 Hb_009862_020 Hb_009862_020 Hb_000923_100--Hb_009862_020 Hb_002835_280 Hb_002835_280 Hb_000923_100--Hb_002835_280 Hb_000336_180 Hb_000336_180 Hb_000923_100--Hb_000336_180 Hb_000203_200 Hb_000203_200 Hb_000923_100--Hb_000203_200 Hb_121089_020 Hb_121089_020 Hb_000923_100--Hb_121089_020 Hb_009189_050 Hb_009189_050 Hb_000371_120--Hb_009189_050 Hb_003209_090 Hb_003209_090 Hb_000371_120--Hb_003209_090 Hb_001102_200 Hb_001102_200 Hb_000371_120--Hb_001102_200 Hb_005408_080 Hb_005408_080 Hb_000371_120--Hb_005408_080 Hb_001474_050 Hb_001474_050 Hb_000371_120--Hb_001474_050 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_023344_110 Hb_023344_110 Hb_003849_190--Hb_023344_110 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_005054_020 Hb_005054_020 Hb_000028_430--Hb_005054_020 Hb_001250_080 Hb_001250_080 Hb_000028_430--Hb_001250_080 Hb_000227_280 Hb_000227_280 Hb_000028_430--Hb_000227_280 Hb_000928_120 Hb_000928_120 Hb_000028_430--Hb_000928_120 Hb_003001_130 Hb_003001_130 Hb_000028_430--Hb_003001_130 Hb_000028_430--Hb_003849_190 Hb_000110_260--Hb_001102_200 Hb_089305_010 Hb_089305_010 Hb_000110_260--Hb_089305_010 Hb_000120_090 Hb_000120_090 Hb_000110_260--Hb_000120_090 Hb_021409_110 Hb_021409_110 Hb_000110_260--Hb_021409_110 Hb_000110_260--Hb_005408_080 Hb_091318_010 Hb_091318_010 Hb_000110_260--Hb_091318_010 Hb_002078_290--Hb_003849_190 Hb_002078_290--Hb_000028_430 Hb_031022_020 Hb_031022_020 Hb_002078_290--Hb_031022_020 Hb_084849_010 Hb_084849_010 Hb_002078_290--Hb_084849_010 Hb_004218_120 Hb_004218_120 Hb_002078_290--Hb_004218_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6003 141.86 127.735 180.687 3.52152 7.70873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0405 36.3357 10.157 12.2224 82.5029

CAGE analysis