Hb_000923_100

Information

Type -
Description -
Location Contig923: 161672-165366
Sequence    

Annotation

kegg
ID rcu:RCOM_1677610
description chloride channel clc, putative
nr
ID XP_002509531.1
description chloride channel clc, putative [Ricinus communis]
swissprot
ID P92942
description Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1
trembl
ID B9RBJ7
description Chloride channel protein OS=Ricinus communis GN=RCOM_1677610 PE=3 SV=1
Gene Ontology
ID GO:0016021
description chloride channel protein clc-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_100 0.0 - - chloride channel clc, putative [Ricinus communis]
2 Hb_009862_020 0.1292324939 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
3 Hb_000077_160 0.1306295554 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
4 Hb_002835_280 0.1335697653 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
5 Hb_000336_180 0.1351536001 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000203_200 0.1379201672 - - Pollen allergen Che a 1 precursor, putative [Ricinus communis]
7 Hb_121089_020 0.1421993225 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
8 Hb_009449_100 0.1431222551 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
9 Hb_000028_430 0.1457335676 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
10 Hb_002983_110 0.1463426893 - - PREDICTED: uncharacterized protein LOC105634780 [Jatropha curcas]
11 Hb_008248_020 0.1505067466 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
12 Hb_001102_200 0.1510565704 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
13 Hb_004678_010 0.1530317197 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
14 Hb_005305_120 0.1540864865 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
15 Hb_054865_050 0.1541685974 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_001621_050 0.1557563985 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
17 Hb_007382_100 0.1577723222 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
18 Hb_004052_110 0.1585715718 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
19 Hb_000110_260 0.1591900175 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
20 Hb_000032_510 0.1598310285 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000923_100 Hb_000923_100 Hb_009862_020 Hb_009862_020 Hb_000923_100--Hb_009862_020 Hb_000077_160 Hb_000077_160 Hb_000923_100--Hb_000077_160 Hb_002835_280 Hb_002835_280 Hb_000923_100--Hb_002835_280 Hb_000336_180 Hb_000336_180 Hb_000923_100--Hb_000336_180 Hb_000203_200 Hb_000203_200 Hb_000923_100--Hb_000203_200 Hb_121089_020 Hb_121089_020 Hb_000923_100--Hb_121089_020 Hb_000028_430 Hb_000028_430 Hb_009862_020--Hb_000028_430 Hb_005162_140 Hb_005162_140 Hb_009862_020--Hb_005162_140 Hb_003849_190 Hb_003849_190 Hb_009862_020--Hb_003849_190 Hb_005305_120 Hb_005305_120 Hb_009862_020--Hb_005305_120 Hb_008248_020 Hb_008248_020 Hb_009862_020--Hb_008248_020 Hb_000371_120 Hb_000371_120 Hb_000077_160--Hb_000371_120 Hb_000077_160--Hb_003849_190 Hb_000077_160--Hb_000028_430 Hb_000110_260 Hb_000110_260 Hb_000077_160--Hb_000110_260 Hb_002078_290 Hb_002078_290 Hb_000077_160--Hb_002078_290 Hb_002835_280--Hb_005305_120 Hb_001153_100 Hb_001153_100 Hb_002835_280--Hb_001153_100 Hb_001969_130 Hb_001969_130 Hb_002835_280--Hb_001969_130 Hb_000032_510 Hb_000032_510 Hb_002835_280--Hb_000032_510 Hb_001124_140 Hb_001124_140 Hb_002835_280--Hb_001124_140 Hb_005725_280 Hb_005725_280 Hb_000336_180--Hb_005725_280 Hb_001294_050 Hb_001294_050 Hb_000336_180--Hb_001294_050 Hb_001102_090 Hb_001102_090 Hb_000336_180--Hb_001102_090 Hb_132840_020 Hb_132840_020 Hb_000336_180--Hb_132840_020 Hb_001396_120 Hb_001396_120 Hb_000336_180--Hb_001396_120 Hb_007224_010 Hb_007224_010 Hb_000336_180--Hb_007224_010 Hb_000922_320 Hb_000922_320 Hb_000203_200--Hb_000922_320 Hb_000327_200 Hb_000327_200 Hb_000203_200--Hb_000327_200 Hb_002281_010 Hb_002281_010 Hb_000203_200--Hb_002281_010 Hb_000979_140 Hb_000979_140 Hb_000203_200--Hb_000979_140 Hb_004052_110 Hb_004052_110 Hb_000203_200--Hb_004052_110 Hb_002900_120 Hb_002900_120 Hb_121089_020--Hb_002900_120 Hb_024714_070 Hb_024714_070 Hb_121089_020--Hb_024714_070 Hb_000015_090 Hb_000015_090 Hb_121089_020--Hb_000015_090 Hb_007416_260 Hb_007416_260 Hb_121089_020--Hb_007416_260 Hb_000711_010 Hb_000711_010 Hb_121089_020--Hb_000711_010 Hb_002804_010 Hb_002804_010 Hb_121089_020--Hb_002804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0418429 0.535862 0.404867 0.405858 0.0195869 0.029393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118909 0.112272 0.0354375 0.0893746 0.394888

CAGE analysis