Hb_002281_010

Information

Type -
Description -
Location Contig2281: 8186-10811
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47550g
description POPTRDRAFT_550665; hypothetical protein
nr
ID XP_002299077.2
description hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
swissprot
ID B3GS44
description GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1
trembl
ID B9GHJ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s47550g PE=4 SV=2
Gene Ontology
ID GO:0031225
description gpi-anchored protein lorelei-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23769: 9249-10057 , PASA_asmbl_23770: 8239-10766 , PASA_asmbl_23771: 8239-10846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002281_010 0.0 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
2 Hb_000915_130 0.1132613401 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
3 Hb_012762_040 0.1141710428 - - big map kinase/bmk, putative [Ricinus communis]
4 Hb_005332_140 0.1152787453 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
5 Hb_000000_480 0.1156868523 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
6 Hb_002325_060 0.1178216961 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
7 Hb_011671_340 0.1271481823 - - small GTPase [Hevea brasiliensis]
8 Hb_000922_320 0.1290264996 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
9 Hb_029253_010 0.1292798494 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
10 Hb_005357_110 0.1295015765 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
11 Hb_000197_180 0.1297578366 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
12 Hb_003777_130 0.1343824752 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
13 Hb_003849_190 0.1346394843 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
14 Hb_091318_010 0.1348197195 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
15 Hb_000815_310 0.1379039005 - - protein kinase, putative [Ricinus communis]
16 Hb_000787_080 0.1390602834 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
17 Hb_000032_410 0.1401532626 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
18 Hb_002249_170 0.1407605547 - - copine, putative [Ricinus communis]
19 Hb_003581_280 0.1409404736 - - KINASE 2B family protein [Populus trichocarpa]
20 Hb_001729_020 0.14159479 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002281_010 Hb_002281_010 Hb_000915_130 Hb_000915_130 Hb_002281_010--Hb_000915_130 Hb_012762_040 Hb_012762_040 Hb_002281_010--Hb_012762_040 Hb_005332_140 Hb_005332_140 Hb_002281_010--Hb_005332_140 Hb_000000_480 Hb_000000_480 Hb_002281_010--Hb_000000_480 Hb_002325_060 Hb_002325_060 Hb_002281_010--Hb_002325_060 Hb_011671_340 Hb_011671_340 Hb_002281_010--Hb_011671_340 Hb_000032_410 Hb_000032_410 Hb_000915_130--Hb_000032_410 Hb_005357_110 Hb_005357_110 Hb_000915_130--Hb_005357_110 Hb_005511_130 Hb_005511_130 Hb_000915_130--Hb_005511_130 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_004730_020 Hb_004730_020 Hb_000915_130--Hb_004730_020 Hb_000979_140 Hb_000979_140 Hb_012762_040--Hb_000979_140 Hb_001865_100 Hb_001865_100 Hb_012762_040--Hb_001865_100 Hb_012762_040--Hb_000000_480 Hb_001729_020 Hb_001729_020 Hb_012762_040--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_012762_040--Hb_000197_180 Hb_000098_180 Hb_000098_180 Hb_012762_040--Hb_000098_180 Hb_003581_280 Hb_003581_280 Hb_005332_140--Hb_003581_280 Hb_003177_070 Hb_003177_070 Hb_005332_140--Hb_003177_070 Hb_001102_090 Hb_001102_090 Hb_005332_140--Hb_001102_090 Hb_001474_050 Hb_001474_050 Hb_005332_140--Hb_001474_050 Hb_002900_120 Hb_002900_120 Hb_005332_140--Hb_002900_120 Hb_004218_130 Hb_004218_130 Hb_000000_480--Hb_004218_130 Hb_000622_330 Hb_000622_330 Hb_000000_480--Hb_000622_330 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_029253_010 Hb_029253_010 Hb_000000_480--Hb_029253_010 Hb_002325_060--Hb_000622_330 Hb_000922_320 Hb_000922_320 Hb_002325_060--Hb_000922_320 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_005054_020 Hb_005054_020 Hb_002325_060--Hb_005054_020 Hb_001155_050 Hb_001155_050 Hb_011671_340--Hb_001155_050 Hb_013405_070 Hb_013405_070 Hb_011671_340--Hb_013405_070 Hb_000800_020 Hb_000800_020 Hb_011671_340--Hb_000800_020 Hb_007426_220 Hb_007426_220 Hb_011671_340--Hb_007426_220 Hb_003271_040 Hb_003271_040 Hb_011671_340--Hb_003271_040 Hb_011671_340--Hb_029253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87302 36.553 49.5749 49.5041 9.89105 4.49826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.0215 9.88864 8.42966 8.9307 23.932

CAGE analysis