Hb_005332_140

Information

Type -
Description -
Location Contig5332: 92478-97578
Sequence    

Annotation

kegg
ID rcu:RCOM_0530980
description hypothetical protein
nr
ID XP_012071416.1
description PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
swissprot
ID Q8GUM4
description Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2
trembl
ID A0A067LD94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10202 PE=4 SV=1
Gene Ontology
ID GO:0050794
description uncharacterized membrane protein at3g27390 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47455: 92481-97342
cDNA
(Sanger)
(ID:Location)		 031_H20.ab1: 96015-97342

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_140 0.0 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
2 Hb_003581_280 0.098769875 - - KINASE 2B family protein [Populus trichocarpa]
3 Hb_003177_070 0.1081376948 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
4 Hb_001102_090 0.1133906229 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
5 Hb_001474_050 0.1150255392 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
6 Hb_002281_010 0.1152787453 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
7 Hb_002900_120 0.1194389802 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
8 Hb_000753_140 0.1196587395 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
9 Hb_000418_050 0.1222254511 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
10 Hb_001294_050 0.1229451041 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
11 Hb_000170_160 0.1266427948 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
12 Hb_121089_020 0.1273915147 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
13 Hb_000336_180 0.1275616418 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000815_310 0.1276161779 - - protein kinase, putative [Ricinus communis]
15 Hb_001898_130 0.1282751084 - - ATP binding protein, putative [Ricinus communis]
16 Hb_003777_130 0.1286108978 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
17 Hb_143766_030 0.1292477494 - - protein with unknown function [Ricinus communis]
18 Hb_000009_200 0.1310323128 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
19 Hb_007416_260 0.1374026496 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
20 Hb_000261_280 0.1382979133 - - BnaA10g23810D [Brassica napus]

Gene co-expression network

sample Hb_005332_140 Hb_005332_140 Hb_003581_280 Hb_003581_280 Hb_005332_140--Hb_003581_280 Hb_003177_070 Hb_003177_070 Hb_005332_140--Hb_003177_070 Hb_001102_090 Hb_001102_090 Hb_005332_140--Hb_001102_090 Hb_001474_050 Hb_001474_050 Hb_005332_140--Hb_001474_050 Hb_002281_010 Hb_002281_010 Hb_005332_140--Hb_002281_010 Hb_002900_120 Hb_002900_120 Hb_005332_140--Hb_002900_120 Hb_003581_280--Hb_002900_120 Hb_000045_260 Hb_000045_260 Hb_003581_280--Hb_000045_260 Hb_124677_040 Hb_124677_040 Hb_003581_280--Hb_124677_040 Hb_000421_230 Hb_000421_230 Hb_003581_280--Hb_000421_230 Hb_004108_240 Hb_004108_240 Hb_003581_280--Hb_004108_240 Hb_000815_310 Hb_000815_310 Hb_003177_070--Hb_000815_310 Hb_001009_120 Hb_001009_120 Hb_003177_070--Hb_001009_120 Hb_033152_090 Hb_033152_090 Hb_003177_070--Hb_033152_090 Hb_000418_050 Hb_000418_050 Hb_003177_070--Hb_000418_050 Hb_000421_110 Hb_000421_110 Hb_003177_070--Hb_000421_110 Hb_003777_130 Hb_003777_130 Hb_003177_070--Hb_003777_130 Hb_001294_050 Hb_001294_050 Hb_001102_090--Hb_001294_050 Hb_000336_180 Hb_000336_180 Hb_001102_090--Hb_000336_180 Hb_132840_020 Hb_132840_020 Hb_001102_090--Hb_132840_020 Hb_000035_490 Hb_000035_490 Hb_001102_090--Hb_000035_490 Hb_000009_200 Hb_000009_200 Hb_001102_090--Hb_000009_200 Hb_001898_130 Hb_001898_130 Hb_001474_050--Hb_001898_130 Hb_000735_140 Hb_000735_140 Hb_001474_050--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_001474_050--Hb_003849_190 Hb_001102_200 Hb_001102_200 Hb_001474_050--Hb_001102_200 Hb_143766_030 Hb_143766_030 Hb_001474_050--Hb_143766_030 Hb_000915_130 Hb_000915_130 Hb_002281_010--Hb_000915_130 Hb_012762_040 Hb_012762_040 Hb_002281_010--Hb_012762_040 Hb_000000_480 Hb_000000_480 Hb_002281_010--Hb_000000_480 Hb_002325_060 Hb_002325_060 Hb_002281_010--Hb_002325_060 Hb_011671_340 Hb_011671_340 Hb_002281_010--Hb_011671_340 Hb_002965_050 Hb_002965_050 Hb_002900_120--Hb_002965_050 Hb_002876_210 Hb_002876_210 Hb_002900_120--Hb_002876_210 Hb_000156_090 Hb_000156_090 Hb_002900_120--Hb_000156_090 Hb_000711_010 Hb_000711_010 Hb_002900_120--Hb_000711_010 Hb_004774_020 Hb_004774_020 Hb_002900_120--Hb_004774_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49902 28.2293 22.5598 17.7789 6.04875 2.18139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52796 3.82611 4.57628 4.55342 14.0541

CAGE analysis