Hb_004108_240

Information

Type -
Description -
Location Contig4108: 203263-208469
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05550g
description POPTRDRAFT_551192; hypothetical protein
nr
ID XP_002302120.1
description hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
swissprot
ID Q9XIN8
description F-box protein At2g27310 OS=Arabidopsis thaliana GN=At2g27310 PE=2 SV=1
trembl
ID B9GSQ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05550g PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at2g27310-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40601: 201995-202375
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_240 0.0 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
2 Hb_124677_040 0.0762772879 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
3 Hb_000045_260 0.0971381035 - - protein with unknown function [Ricinus communis]
4 Hb_003925_040 0.1007609245 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
5 Hb_001376_010 0.1009408511 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
6 Hb_003147_060 0.1029580206 - - syntaxin, plant, putative [Ricinus communis]
7 Hb_004774_020 0.1033047295 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
8 Hb_003581_280 0.1039155141 - - KINASE 2B family protein [Populus trichocarpa]
9 Hb_000925_030 0.1050535837 - - ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_011631_010 0.1078523802 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
11 Hb_002900_120 0.1087693239 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
12 Hb_000699_210 0.1104567595 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
13 Hb_000421_230 0.1111626253 - - retinal degeneration B beta, putative [Ricinus communis]
14 Hb_000638_280 0.1115031733 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_000186_200 0.1125606761 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
16 Hb_002701_210 0.1133500241 - - Protein COBRA precursor, putative [Ricinus communis]
17 Hb_003411_030 0.119867505 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
18 Hb_002897_050 0.1215693847 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
19 Hb_004117_170 0.1277172487 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
20 Hb_001437_010 0.1281369743 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_240 Hb_004108_240 Hb_124677_040 Hb_124677_040 Hb_004108_240--Hb_124677_040 Hb_000045_260 Hb_000045_260 Hb_004108_240--Hb_000045_260 Hb_003925_040 Hb_003925_040 Hb_004108_240--Hb_003925_040 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_004108_240--Hb_003147_060 Hb_004774_020 Hb_004774_020 Hb_004108_240--Hb_004774_020 Hb_003581_280 Hb_003581_280 Hb_124677_040--Hb_003581_280 Hb_002900_120 Hb_002900_120 Hb_124677_040--Hb_002900_120 Hb_124677_040--Hb_004774_020 Hb_124677_040--Hb_003925_040 Hb_000925_030 Hb_000925_030 Hb_124677_040--Hb_000925_030 Hb_011631_010 Hb_011631_010 Hb_000045_260--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_000045_260--Hb_000638_280 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_002897_050 Hb_002897_050 Hb_000045_260--Hb_002897_050 Hb_000084_240 Hb_000084_240 Hb_000045_260--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230 Hb_003925_040--Hb_003147_060 Hb_003925_040--Hb_004774_020 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_009545_090 Hb_009545_090 Hb_003925_040--Hb_009545_090 Hb_002042_170 Hb_002042_170 Hb_003925_040--Hb_002042_170 Hb_000035_050 Hb_000035_050 Hb_001376_010--Hb_000035_050 Hb_001376_010--Hb_000638_280 Hb_004117_170 Hb_004117_170 Hb_001376_010--Hb_004117_170 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090 Hb_003147_060--Hb_000925_030 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_003147_060--Hb_009545_090 Hb_004774_020--Hb_002042_170 Hb_004774_020--Hb_002900_120 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81452 14.1194 7.5257 5.99323 1.79611 1.19165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7866 4.05381 1.96008 2.10314 3.3028

CAGE analysis