Hb_000421_230

Information

Type -
Description -
Location Contig421: 159170-171009
Sequence    

Annotation

kegg
ID rcu:RCOM_1398840
description retinal degeneration B beta, putative
nr
ID XP_002526338.1
description retinal degeneration B beta, putative [Ricinus communis]
swissprot
ID Q9NCL7
description Phosphatidylinositol transfer protein 2 OS=Dictyostelium discoideum GN=pitB PE=2 SV=1
trembl
ID B9SK19
description Retinal degeneration B beta, putative OS=Ricinus communis GN=RCOM_1398840 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol transfer protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_230 0.0 - - retinal degeneration B beta, putative [Ricinus communis]
2 Hb_003581_280 0.0936755134 - - KINASE 2B family protein [Populus trichocarpa]
3 Hb_000045_260 0.0977747675 - - protein with unknown function [Ricinus communis]
4 Hb_004125_060 0.1101749609 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000638_280 0.110572579 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_004108_240 0.1111626253 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
7 Hb_000925_030 0.1138886202 - - ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_018790_050 0.1153786408 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
9 Hb_124677_040 0.1168028657 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
10 Hb_000749_070 0.1177742834 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
11 Hb_161901_020 0.1187521755 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
12 Hb_090782_010 0.1194521756 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
13 Hb_012545_030 0.12023957 - - Polyadenylate-binding protein RBP47C [Glycine soja]
14 Hb_002900_120 0.1228327423 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
15 Hb_013358_020 0.1242108097 - - ccr4-associated factor, putative [Ricinus communis]
16 Hb_001246_160 0.1259001516 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
17 Hb_000445_100 0.127640941 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
18 Hb_001085_300 0.1313347398 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
19 Hb_004117_170 0.1315440478 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
20 Hb_001376_010 0.1337573784 - - diacylglycerol kinase, alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_000421_230 Hb_000421_230 Hb_003581_280 Hb_003581_280 Hb_000421_230--Hb_003581_280 Hb_000045_260 Hb_000045_260 Hb_000421_230--Hb_000045_260 Hb_004125_060 Hb_004125_060 Hb_000421_230--Hb_004125_060 Hb_000638_280 Hb_000638_280 Hb_000421_230--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_000421_230--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_000421_230--Hb_000925_030 Hb_002900_120 Hb_002900_120 Hb_003581_280--Hb_002900_120 Hb_003581_280--Hb_000045_260 Hb_124677_040 Hb_124677_040 Hb_003581_280--Hb_124677_040 Hb_005332_140 Hb_005332_140 Hb_003581_280--Hb_005332_140 Hb_003581_280--Hb_004108_240 Hb_011631_010 Hb_011631_010 Hb_000045_260--Hb_011631_010 Hb_000045_260--Hb_000638_280 Hb_000454_140 Hb_000454_140 Hb_000045_260--Hb_000454_140 Hb_002897_050 Hb_002897_050 Hb_000045_260--Hb_002897_050 Hb_000084_240 Hb_000084_240 Hb_000045_260--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_000045_260--Hb_000163_230 Hb_000684_100 Hb_000684_100 Hb_004125_060--Hb_000684_100 Hb_161901_020 Hb_161901_020 Hb_004125_060--Hb_161901_020 Hb_000009_220 Hb_000009_220 Hb_004125_060--Hb_000009_220 Hb_000979_060 Hb_000979_060 Hb_004125_060--Hb_000979_060 Hb_012545_030 Hb_012545_030 Hb_004125_060--Hb_012545_030 Hb_000638_280--Hb_002897_050 Hb_000156_090 Hb_000156_090 Hb_000638_280--Hb_000156_090 Hb_000699_210 Hb_000699_210 Hb_000638_280--Hb_000699_210 Hb_000638_280--Hb_011631_010 Hb_000796_120 Hb_000796_120 Hb_000638_280--Hb_000796_120 Hb_004108_240--Hb_124677_040 Hb_004108_240--Hb_000045_260 Hb_003925_040 Hb_003925_040 Hb_004108_240--Hb_003925_040 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_003147_060 Hb_003147_060 Hb_004108_240--Hb_003147_060 Hb_004774_020 Hb_004774_020 Hb_004108_240--Hb_004774_020 Hb_000925_030--Hb_003147_060 Hb_000925_030--Hb_003925_040 Hb_000925_030--Hb_004108_240 Hb_000925_030--Hb_124677_040 Hb_002107_060 Hb_002107_060 Hb_000925_030--Hb_002107_060 Hb_001638_030 Hb_001638_030 Hb_000925_030--Hb_001638_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73604 16.9353 17.2613 7.63265 2.36303 1.73005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09616 5.46216 2.57885 3.20997 3.94346

CAGE analysis