Hb_000110_260

Information

Type -
Description -
Location Contig110: 298357-300778
Sequence    

Annotation

kegg
ID rcu:RCOM_0353240
description protein with unknown function
nr
ID XP_012082069.1
description PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID A0A067JZI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18312 PE=4 SV=1
Gene Ontology
ID GO:0050896
description regulator of vps4 activity in the mvb pathway

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03064: 298427-300857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_260 0.0 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
2 Hb_001102_200 0.0902981818 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
3 Hb_089305_010 0.110965745 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
4 Hb_000120_090 0.1178777068 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
5 Hb_021409_110 0.1240907742 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_005408_080 0.1295509583 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
7 Hb_091318_010 0.1302997444 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
8 Hb_010812_060 0.1338319665 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
9 Hb_000329_790 0.1350024248 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
10 Hb_004678_010 0.1360405185 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
11 Hb_000077_160 0.1367379957 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
12 Hb_005725_280 0.1386283526 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
13 Hb_009449_100 0.1436223191 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
14 Hb_005064_070 0.1455706258 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
15 Hb_001179_010 0.1461368938 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
16 Hb_004899_110 0.1477736931 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
17 Hb_001294_050 0.151193859 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
18 Hb_005080_020 0.1515391206 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
19 Hb_001621_050 0.1534996665 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
20 Hb_132840_020 0.1557809691 - - PREDICTED: protein LHY [Jatropha curcas]

Gene co-expression network

sample Hb_000110_260 Hb_000110_260 Hb_001102_200 Hb_001102_200 Hb_000110_260--Hb_001102_200 Hb_089305_010 Hb_089305_010 Hb_000110_260--Hb_089305_010 Hb_000120_090 Hb_000120_090 Hb_000110_260--Hb_000120_090 Hb_021409_110 Hb_021409_110 Hb_000110_260--Hb_021409_110 Hb_005408_080 Hb_005408_080 Hb_000110_260--Hb_005408_080 Hb_091318_010 Hb_091318_010 Hb_000110_260--Hb_091318_010 Hb_000320_270 Hb_000320_270 Hb_001102_200--Hb_000320_270 Hb_000329_790 Hb_000329_790 Hb_001102_200--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_001102_200--Hb_005064_070 Hb_005725_280 Hb_005725_280 Hb_001102_200--Hb_005725_280 Hb_001102_200--Hb_089305_010 Hb_089305_010--Hb_000120_090 Hb_001621_050 Hb_001621_050 Hb_089305_010--Hb_001621_050 Hb_000567_330 Hb_000567_330 Hb_089305_010--Hb_000567_330 Hb_010812_060 Hb_010812_060 Hb_089305_010--Hb_010812_060 Hb_089305_010--Hb_021409_110 Hb_000120_090--Hb_001621_050 Hb_000120_090--Hb_001102_200 Hb_000272_030 Hb_000272_030 Hb_000120_090--Hb_000272_030 Hb_001213_030 Hb_001213_030 Hb_000120_090--Hb_001213_030 Hb_007224_010 Hb_007224_010 Hb_021409_110--Hb_007224_010 Hb_021409_110--Hb_001621_050 Hb_001863_340 Hb_001863_340 Hb_021409_110--Hb_001863_340 Hb_021409_110--Hb_005725_280 Hb_002400_040 Hb_002400_040 Hb_005408_080--Hb_002400_040 Hb_000892_030 Hb_000892_030 Hb_005408_080--Hb_000892_030 Hb_094437_050 Hb_094437_050 Hb_005408_080--Hb_094437_050 Hb_005408_080--Hb_005725_280 Hb_001329_080 Hb_001329_080 Hb_005408_080--Hb_001329_080 Hb_029253_010 Hb_029253_010 Hb_091318_010--Hb_029253_010 Hb_000008_200 Hb_000008_200 Hb_091318_010--Hb_000008_200 Hb_004679_040 Hb_004679_040 Hb_091318_010--Hb_004679_040 Hb_005357_110 Hb_005357_110 Hb_091318_010--Hb_005357_110 Hb_000032_410 Hb_000032_410 Hb_091318_010--Hb_000032_410 Hb_000915_130 Hb_000915_130 Hb_091318_010--Hb_000915_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03525 57.1899 65.9517 62.1418 1.213 4.70525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1808 6.06038 7.51283 9.53191 40.3258

CAGE analysis