Hb_001621_050

Information

Type -
Description -
Location Contig1621: 106240-109882
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20760g
description POPTRDRAFT_1092043; hypothetical protein
nr
ID XP_012088684.1
description PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5G2L3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20760g PE=4 SV=1
Gene Ontology
ID GO:0016740
description beta- -n-acetylglucosaminyltransferase lunatic isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14616: 105592-106410 , PASA_asmbl_14618: 107782-108200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_050 0.0 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
2 Hb_089305_010 0.1055976343 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
3 Hb_000120_090 0.1194932372 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
4 Hb_021409_110 0.1211641881 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_005725_280 0.1327914791 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
6 Hb_000077_160 0.1394722995 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
7 Hb_001102_200 0.1445357865 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
8 Hb_000336_180 0.1504350039 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000110_260 0.1534996665 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
10 Hb_007224_010 0.1555059447 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
11 Hb_000923_100 0.1557563985 - - chloride channel clc, putative [Ricinus communis]
12 Hb_001396_120 0.1607505775 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
13 Hb_000371_120 0.1631515732 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
14 Hb_001519_060 0.1679578301 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
15 Hb_004678_010 0.1724250078 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
16 Hb_002498_250 0.1796943197 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_091318_010 0.1813263813 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
18 Hb_001474_050 0.1835239882 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
19 Hb_094437_050 0.1837265614 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
20 Hb_000892_030 0.1839529943 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_001621_050 Hb_001621_050 Hb_089305_010 Hb_089305_010 Hb_001621_050--Hb_089305_010 Hb_000120_090 Hb_000120_090 Hb_001621_050--Hb_000120_090 Hb_021409_110 Hb_021409_110 Hb_001621_050--Hb_021409_110 Hb_005725_280 Hb_005725_280 Hb_001621_050--Hb_005725_280 Hb_000077_160 Hb_000077_160 Hb_001621_050--Hb_000077_160 Hb_001102_200 Hb_001102_200 Hb_001621_050--Hb_001102_200 Hb_089305_010--Hb_000120_090 Hb_000567_330 Hb_000567_330 Hb_089305_010--Hb_000567_330 Hb_010812_060 Hb_010812_060 Hb_089305_010--Hb_010812_060 Hb_000110_260 Hb_000110_260 Hb_089305_010--Hb_000110_260 Hb_089305_010--Hb_021409_110 Hb_000120_090--Hb_000110_260 Hb_000120_090--Hb_001102_200 Hb_000272_030 Hb_000272_030 Hb_000120_090--Hb_000272_030 Hb_001213_030 Hb_001213_030 Hb_000120_090--Hb_001213_030 Hb_007224_010 Hb_007224_010 Hb_021409_110--Hb_007224_010 Hb_021409_110--Hb_000110_260 Hb_001863_340 Hb_001863_340 Hb_021409_110--Hb_001863_340 Hb_021409_110--Hb_005725_280 Hb_000336_180 Hb_000336_180 Hb_005725_280--Hb_000336_180 Hb_094437_050 Hb_094437_050 Hb_005725_280--Hb_094437_050 Hb_000892_030 Hb_000892_030 Hb_005725_280--Hb_000892_030 Hb_002498_250 Hb_002498_250 Hb_005725_280--Hb_002498_250 Hb_004218_080 Hb_004218_080 Hb_005725_280--Hb_004218_080 Hb_007193_030 Hb_007193_030 Hb_005725_280--Hb_007193_030 Hb_000923_100 Hb_000923_100 Hb_000077_160--Hb_000923_100 Hb_000371_120 Hb_000371_120 Hb_000077_160--Hb_000371_120 Hb_003849_190 Hb_003849_190 Hb_000077_160--Hb_003849_190 Hb_000028_430 Hb_000028_430 Hb_000077_160--Hb_000028_430 Hb_000077_160--Hb_000110_260 Hb_002078_290 Hb_002078_290 Hb_000077_160--Hb_002078_290 Hb_001102_200--Hb_000110_260 Hb_000320_270 Hb_000320_270 Hb_001102_200--Hb_000320_270 Hb_000329_790 Hb_000329_790 Hb_001102_200--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_001102_200--Hb_005064_070 Hb_001102_200--Hb_005725_280 Hb_001102_200--Hb_089305_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13894 14.8 14.3866 13.0444 0.204076 0.341067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80521 1.09429 1.18314 0.520113 10.3459

CAGE analysis