Hb_000120_090

Information

Type -
Description -
Location Contig120: 60837-65500
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25910g
description POPTRDRAFT_815304; hypothetical protein
nr
ID XP_012067517.1
description PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
swissprot
ID Q944C1
description Phosphoinositide phospholipase C 4 OS=Arabidopsis thaliana GN=PLC4 PE=2 SV=2
trembl
ID A0A067LNP3
description Phosphoinositide phospholipase C OS=Jatropha curcas GN=JCGZ_08462 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphoinositide phospholipase c 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06056: 61041-65475 , PASA_asmbl_06057: 61775-62055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_090 0.0 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
2 Hb_089305_010 0.095938011 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
3 Hb_000110_260 0.1178777068 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
4 Hb_001621_050 0.1194932372 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
5 Hb_001102_200 0.1327629072 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
6 Hb_000272_030 0.1394832597 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
7 Hb_001213_030 0.142277806 - - PAR1 protein [Theobroma cacao]
8 Hb_000107_090 0.1464138035 - - PREDICTED: kinesin KP1 [Jatropha curcas]
9 Hb_006570_060 0.1488693086 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
10 Hb_021409_110 0.1495184025 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_005488_130 0.1504836506 - - transporter, putative [Ricinus communis]
12 Hb_005725_280 0.1519134559 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
13 Hb_028227_040 0.1531513764 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
14 Hb_000371_120 0.1550570479 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
15 Hb_010812_060 0.1582402387 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
16 Hb_002838_010 0.1587805938 - - AGPase large subunit protein [Hevea brasiliensis]
17 Hb_000260_410 0.159033961 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
18 Hb_004678_010 0.1601002067 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
19 Hb_001269_240 0.1610654595 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
20 Hb_000077_160 0.1627752303 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000120_090 Hb_000120_090 Hb_089305_010 Hb_089305_010 Hb_000120_090--Hb_089305_010 Hb_000110_260 Hb_000110_260 Hb_000120_090--Hb_000110_260 Hb_001621_050 Hb_001621_050 Hb_000120_090--Hb_001621_050 Hb_001102_200 Hb_001102_200 Hb_000120_090--Hb_001102_200 Hb_000272_030 Hb_000272_030 Hb_000120_090--Hb_000272_030 Hb_001213_030 Hb_001213_030 Hb_000120_090--Hb_001213_030 Hb_089305_010--Hb_001621_050 Hb_000567_330 Hb_000567_330 Hb_089305_010--Hb_000567_330 Hb_010812_060 Hb_010812_060 Hb_089305_010--Hb_010812_060 Hb_089305_010--Hb_000110_260 Hb_021409_110 Hb_021409_110 Hb_089305_010--Hb_021409_110 Hb_000110_260--Hb_001102_200 Hb_000110_260--Hb_021409_110 Hb_005408_080 Hb_005408_080 Hb_000110_260--Hb_005408_080 Hb_091318_010 Hb_091318_010 Hb_000110_260--Hb_091318_010 Hb_001621_050--Hb_021409_110 Hb_005725_280 Hb_005725_280 Hb_001621_050--Hb_005725_280 Hb_000077_160 Hb_000077_160 Hb_001621_050--Hb_000077_160 Hb_001621_050--Hb_001102_200 Hb_000320_270 Hb_000320_270 Hb_001102_200--Hb_000320_270 Hb_000329_790 Hb_000329_790 Hb_001102_200--Hb_000329_790 Hb_005064_070 Hb_005064_070 Hb_001102_200--Hb_005064_070 Hb_001102_200--Hb_005725_280 Hb_001102_200--Hb_089305_010 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000260_410 Hb_000260_410 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_001357_060 Hb_001357_060 Hb_001213_030--Hb_001357_060 Hb_001951_230 Hb_001951_230 Hb_001213_030--Hb_001951_230 Hb_000659_040 Hb_000659_040 Hb_001213_030--Hb_000659_040 Hb_001213_030--Hb_002838_010 Hb_000363_250 Hb_000363_250 Hb_001213_030--Hb_000363_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.389174 12.9326 12.3966 13.1764 0.0825582 0.0937656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.826869 0.907434 1.23484 1.02143 11.8433

CAGE analysis