Hb_000941_090

Information

Type -
Description -
Location Contig941: 94207-97054
Sequence    

Annotation

kegg
ID rcu:RCOM_0277570
description hypothetical protein
nr
ID XP_012087787.1
description PREDICTED: protein trichome birefringence [Jatropha curcas]
swissprot
ID Q9FG35
description Protein trichome birefringence OS=Arabidopsis thaliana GN=TBR PE=1 SV=1
trembl
ID A0A067JP92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25559 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63171: 94183-96588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_090 0.0 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
2 Hb_002838_010 0.0871834353 - - AGPase large subunit protein [Hevea brasiliensis]
3 Hb_001417_060 0.0879815452 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
4 Hb_031862_120 0.0884415529 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
5 Hb_001789_120 0.0894263276 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
6 Hb_000272_030 0.092588041 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
7 Hb_000260_410 0.0932563574 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
8 Hb_005365_010 0.097252096 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
9 Hb_004880_050 0.0974242895 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000856_200 0.0977401386 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
11 Hb_001046_030 0.1002676253 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_000818_090 0.1009140705 - - glutamate receptor 3 plant, putative [Ricinus communis]
13 Hb_001629_120 0.1013059374 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
14 Hb_000868_130 0.1051083839 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
15 Hb_000173_270 0.1061569147 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
16 Hb_032779_010 0.1078067325 - - unnamed protein product [Vitis vinifera]
17 Hb_000659_040 0.1103055082 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
18 Hb_010222_060 0.1121429517 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_003454_050 0.11222714 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
20 Hb_017491_010 0.1124677394 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000941_090 Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000941_090--Hb_002838_010 Hb_001417_060 Hb_001417_060 Hb_000941_090--Hb_001417_060 Hb_031862_120 Hb_031862_120 Hb_000941_090--Hb_031862_120 Hb_001789_120 Hb_001789_120 Hb_000941_090--Hb_001789_120 Hb_000272_030 Hb_000272_030 Hb_000941_090--Hb_000272_030 Hb_000260_410 Hb_000260_410 Hb_000941_090--Hb_000260_410 Hb_002838_010--Hb_000272_030 Hb_001143_120 Hb_001143_120 Hb_002838_010--Hb_001143_120 Hb_001486_100 Hb_001486_100 Hb_002838_010--Hb_001486_100 Hb_002838_010--Hb_000260_410 Hb_000659_040 Hb_000659_040 Hb_002838_010--Hb_000659_040 Hb_001046_030 Hb_001046_030 Hb_001417_060--Hb_001046_030 Hb_017358_020 Hb_017358_020 Hb_001417_060--Hb_017358_020 Hb_000868_130 Hb_000868_130 Hb_001417_060--Hb_000868_130 Hb_001417_060--Hb_001789_120 Hb_000627_050 Hb_000627_050 Hb_001417_060--Hb_000627_050 Hb_143871_010 Hb_143871_010 Hb_031862_120--Hb_143871_010 Hb_005051_010 Hb_005051_010 Hb_031862_120--Hb_005051_010 Hb_000753_150 Hb_000753_150 Hb_031862_120--Hb_000753_150 Hb_000427_040 Hb_000427_040 Hb_031862_120--Hb_000427_040 Hb_031862_120--Hb_000272_030 Hb_013394_120 Hb_013394_120 Hb_001789_120--Hb_013394_120 Hb_000818_090 Hb_000818_090 Hb_001789_120--Hb_000818_090 Hb_004880_050 Hb_004880_050 Hb_001789_120--Hb_004880_050 Hb_014700_030 Hb_014700_030 Hb_001789_120--Hb_014700_030 Hb_010222_060 Hb_010222_060 Hb_001789_120--Hb_010222_060 Hb_132840_170 Hb_132840_170 Hb_001789_120--Hb_132840_170 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000272_030--Hb_000260_410 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_000260_410--Hb_000173_270 Hb_017491_010 Hb_017491_010 Hb_000260_410--Hb_017491_010 Hb_001629_120 Hb_001629_120 Hb_000260_410--Hb_001629_120 Hb_000260_410--Hb_000818_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.351699 11.7892 15.7049 19.0506 0.102688 0.240671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.45478 0.018833 0.0713216 4.64033 22.6104

CAGE analysis