Hb_001143_120

Information

Type -
Description -
Location Contig1143: 112202-117364
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08250g
description POPTRDRAFT_816266; hypothetical protein
nr
ID XP_012078261.1
description PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GU25
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08250g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_120 0.0 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
2 Hb_000173_270 0.1005184773 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
3 Hb_001301_260 0.1059591906 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
4 Hb_005365_010 0.1073966278 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
5 Hb_044653_050 0.1076064372 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
6 Hb_002838_010 0.1084325575 - - AGPase large subunit protein [Hevea brasiliensis]
7 Hb_000260_410 0.1110580146 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
8 Hb_006570_060 0.1133340996 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
9 Hb_017491_010 0.1174619998 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
10 Hb_000941_090 0.118818161 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
11 Hb_001629_120 0.1192879606 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
12 Hb_002311_280 0.1222405726 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_007894_120 0.1263043502 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_070136_010 0.1265758681 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
15 Hb_003531_050 0.127854678 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
16 Hb_002871_110 0.1294510017 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
17 Hb_119066_010 0.1308703152 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
18 Hb_000272_030 0.1320742068 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
19 Hb_006970_170 0.133268282 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_000818_090 0.1346238839 - - glutamate receptor 3 plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_001143_120 Hb_001143_120 Hb_000173_270 Hb_000173_270 Hb_001143_120--Hb_000173_270 Hb_001301_260 Hb_001301_260 Hb_001143_120--Hb_001301_260 Hb_005365_010 Hb_005365_010 Hb_001143_120--Hb_005365_010 Hb_044653_050 Hb_044653_050 Hb_001143_120--Hb_044653_050 Hb_002838_010 Hb_002838_010 Hb_001143_120--Hb_002838_010 Hb_000260_410 Hb_000260_410 Hb_001143_120--Hb_000260_410 Hb_000173_270--Hb_000260_410 Hb_000173_270--Hb_005365_010 Hb_001629_120 Hb_001629_120 Hb_000173_270--Hb_001629_120 Hb_006570_060 Hb_006570_060 Hb_000173_270--Hb_006570_060 Hb_000173_270--Hb_044653_050 Hb_000272_030 Hb_000272_030 Hb_000173_270--Hb_000272_030 Hb_001606_010 Hb_001606_010 Hb_001301_260--Hb_001606_010 Hb_003531_050 Hb_003531_050 Hb_001301_260--Hb_003531_050 Hb_001352_030 Hb_001352_030 Hb_001301_260--Hb_001352_030 Hb_001301_260--Hb_044653_050 Hb_001301_260--Hb_001629_120 Hb_132356_010 Hb_132356_010 Hb_001301_260--Hb_132356_010 Hb_005365_010--Hb_001629_120 Hb_000818_090 Hb_000818_090 Hb_005365_010--Hb_000818_090 Hb_007270_020 Hb_007270_020 Hb_005365_010--Hb_007270_020 Hb_001417_060 Hb_001417_060 Hb_005365_010--Hb_001417_060 Hb_005365_010--Hb_044653_050 Hb_007130_020 Hb_007130_020 Hb_044653_050--Hb_007130_020 Hb_007894_120 Hb_007894_120 Hb_044653_050--Hb_007894_120 Hb_017491_010 Hb_017491_010 Hb_044653_050--Hb_017491_010 Hb_004228_070 Hb_004228_070 Hb_044653_050--Hb_004228_070 Hb_000941_090 Hb_000941_090 Hb_002838_010--Hb_000941_090 Hb_002838_010--Hb_000272_030 Hb_001486_100 Hb_001486_100 Hb_002838_010--Hb_001486_100 Hb_002838_010--Hb_000260_410 Hb_000659_040 Hb_000659_040 Hb_002838_010--Hb_000659_040 Hb_000260_410--Hb_017491_010 Hb_000260_410--Hb_000272_030 Hb_000260_410--Hb_001629_120 Hb_000260_410--Hb_000941_090 Hb_000260_410--Hb_000818_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.295458 0.545459 0.445799 0.0052173 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0252733 0 0.0190615 0.114301 0.489083

CAGE analysis