Hb_004880_050

Information

Type -
Description -
Location Contig4880: 100891-128203
Sequence    

Annotation

kegg
ID rcu:RCOM_1228290
description hypothetical protein
nr
ID XP_002528881.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O81905
description Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1
trembl
ID B9SSB2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1228290 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45096: 101433-104885 , PASA_asmbl_45097: 104899-105168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004880_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001789_120 0.0568540523 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
3 Hb_014700_030 0.059817871 - - tryptophan synthase beta chain, putative [Ricinus communis]
4 Hb_032779_010 0.0700408596 - - unnamed protein product [Vitis vinifera]
5 Hb_000818_090 0.0756594763 - - glutamate receptor 3 plant, putative [Ricinus communis]
6 Hb_013394_120 0.0832936606 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
7 Hb_010222_060 0.085215254 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_132840_170 0.0934529557 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
9 Hb_001629_120 0.0964288418 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
10 Hb_000941_090 0.0974242895 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
11 Hb_001417_060 0.10081793 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
12 Hb_000680_130 0.1026188897 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_000427_040 0.107043929 - - Gibberellin receptor GID1, putative [Ricinus communis]
14 Hb_000260_410 0.1083682265 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
15 Hb_001046_030 0.109436719 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_005365_010 0.1118556318 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
17 Hb_017491_010 0.1122999985 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
18 Hb_011028_030 0.1154572072 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000608_290 0.1159627546 - - thioredoxin f-type, putative [Ricinus communis]
20 Hb_000010_370 0.1163493448 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]

Gene co-expression network

sample Hb_004880_050 Hb_004880_050 Hb_001789_120 Hb_001789_120 Hb_004880_050--Hb_001789_120 Hb_014700_030 Hb_014700_030 Hb_004880_050--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_004880_050--Hb_032779_010 Hb_000818_090 Hb_000818_090 Hb_004880_050--Hb_000818_090 Hb_013394_120 Hb_013394_120 Hb_004880_050--Hb_013394_120 Hb_010222_060 Hb_010222_060 Hb_004880_050--Hb_010222_060 Hb_001789_120--Hb_013394_120 Hb_001789_120--Hb_000818_090 Hb_001789_120--Hb_014700_030 Hb_001789_120--Hb_010222_060 Hb_132840_170 Hb_132840_170 Hb_001789_120--Hb_132840_170 Hb_014700_030--Hb_010222_060 Hb_014700_030--Hb_032779_010 Hb_014700_030--Hb_013394_120 Hb_014700_030--Hb_132840_170 Hb_000427_040 Hb_000427_040 Hb_032779_010--Hb_000427_040 Hb_032779_010--Hb_001789_120 Hb_005051_010 Hb_005051_010 Hb_032779_010--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_032779_010--Hb_002902_070 Hb_000818_090--Hb_013394_120 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_005365_010 Hb_005365_010 Hb_000818_090--Hb_005365_010 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070 Hb_013394_120--Hb_010222_060 Hb_013394_120--Hb_132840_170 Hb_009522_020 Hb_009522_020 Hb_013394_120--Hb_009522_020 Hb_010222_060--Hb_009522_020 Hb_010222_060--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.43554 1.88237 1.87356 0 0.00228822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00580283 0 0.00881969 0.361084 2.93408

CAGE analysis