Hb_002713_060

Information

Type -
Description -
Location Contig2713: 105371-108248
Sequence    

Annotation

kegg
ID rcu:RCOM_1116960
description oligopeptide transporter, putative
nr
ID XP_012080632.1
description PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
swissprot
ID Q9LVE0
description Protein NRT1/ PTR FAMILY 6.4 OS=Arabidopsis thaliana GN=NPF6.4 PE=1 SV=1
trembl
ID A0A067K3W1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13740 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28425: 105532-108324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002713_060 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
2 Hb_005057_030 0.0790134897 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
3 Hb_173387_010 0.0810374001 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
4 Hb_010222_060 0.0836692678 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002636_070 0.088578655 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
6 Hb_000120_480 0.090502065 - - -
7 Hb_009522_020 0.0910132188 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
8 Hb_003058_170 0.0940873611 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
9 Hb_162676_010 0.0971907326 - - ATP binding protein, putative [Ricinus communis]
10 Hb_125961_010 0.0976696267 - - ATP binding protein, putative [Ricinus communis]
11 Hb_004934_130 0.0977099597 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
12 Hb_003195_080 0.100334717 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
13 Hb_029223_010 0.1019444545 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
14 Hb_001296_060 0.1042719291 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
15 Hb_004835_020 0.1049528449 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
16 Hb_003226_230 0.1049700272 - - PREDICTED: transposon Ty3-G Gag-Pol polyprotein [Phoenix dactylifera]
17 Hb_013394_120 0.1086054578 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
18 Hb_066293_010 0.1086738424 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
19 Hb_000270_640 0.1088689156 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
20 Hb_005723_090 0.1108757491 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002713_060 Hb_002713_060 Hb_005057_030 Hb_005057_030 Hb_002713_060--Hb_005057_030 Hb_173387_010 Hb_173387_010 Hb_002713_060--Hb_173387_010 Hb_010222_060 Hb_010222_060 Hb_002713_060--Hb_010222_060 Hb_002636_070 Hb_002636_070 Hb_002713_060--Hb_002636_070 Hb_000120_480 Hb_000120_480 Hb_002713_060--Hb_000120_480 Hb_009522_020 Hb_009522_020 Hb_002713_060--Hb_009522_020 Hb_005723_090 Hb_005723_090 Hb_005057_030--Hb_005723_090 Hb_125961_010 Hb_125961_010 Hb_005057_030--Hb_125961_010 Hb_005057_030--Hb_000120_480 Hb_005183_100 Hb_005183_100 Hb_005057_030--Hb_005183_100 Hb_003226_230 Hb_003226_230 Hb_005057_030--Hb_003226_230 Hb_173387_010--Hb_009522_020 Hb_132840_170 Hb_132840_170 Hb_173387_010--Hb_132840_170 Hb_000958_090 Hb_000958_090 Hb_173387_010--Hb_000958_090 Hb_173387_010--Hb_010222_060 Hb_004835_020 Hb_004835_020 Hb_173387_010--Hb_004835_020 Hb_013394_120 Hb_013394_120 Hb_010222_060--Hb_013394_120 Hb_014700_030 Hb_014700_030 Hb_010222_060--Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_010222_060--Hb_001789_120 Hb_010222_060--Hb_009522_020 Hb_010222_060--Hb_132840_170 Hb_029223_010 Hb_029223_010 Hb_002636_070--Hb_029223_010 Hb_000680_130 Hb_000680_130 Hb_002636_070--Hb_000680_130 Hb_000705_040 Hb_000705_040 Hb_002636_070--Hb_000705_040 Hb_000270_640 Hb_000270_640 Hb_002636_070--Hb_000270_640 Hb_027337_130 Hb_027337_130 Hb_002636_070--Hb_027337_130 Hb_000120_480--Hb_003226_230 Hb_000120_480--Hb_005723_090 Hb_162676_010 Hb_162676_010 Hb_000120_480--Hb_162676_010 Hb_000120_480--Hb_125961_010 Hb_001158_250 Hb_001158_250 Hb_000120_480--Hb_001158_250 Hb_009522_020--Hb_013394_120 Hb_001206_100 Hb_001206_100 Hb_009522_020--Hb_001206_100 Hb_009522_020--Hb_005183_100 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0980091 8.24274 11.479 18.0833 0.030095 0.0724811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0729872 0.0430742 0.164128 2.93699 35.3482

CAGE analysis