Hb_001296_060

Information

Type -
Description -
Location Contig1296: 85916-88278
Sequence    

Annotation

kegg
ID rcu:RCOM_0884210
description Leucoanthocyanidin dioxygenase, putative (EC:1.14.11.19)
nr
ID XP_002522603.1
description Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
swissprot
ID Q9C6I4
description Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1
trembl
ID B9S9D4
description Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis GN=RCOM_0884210 PE=3 SV=1
Gene Ontology
ID GO:0045431
description probable 2-oxoglutarate fe -dependent dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08854: 87271-88214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001296_060 0.0 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
2 Hb_009522_020 0.0741596476 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
3 Hb_001206_100 0.074457462 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
4 Hb_009421_070 0.0836148701 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
5 Hb_001098_040 0.0877481103 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
6 Hb_005183_100 0.091420141 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
7 Hb_002942_200 0.1005810658 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
8 Hb_010222_060 0.1009310822 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_005057_030 0.1012351359 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_001268_150 0.1028486456 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_004032_190 0.1030482336 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
12 Hb_002713_060 0.1042719291 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
13 Hb_000329_440 0.1044306355 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
14 Hb_013394_120 0.104450953 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
15 Hb_173387_010 0.1052585982 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
16 Hb_005694_160 0.1082563378 - - conserved hypothetical protein [Ricinus communis]
17 Hb_016277_030 0.1098722084 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
18 Hb_000076_060 0.1103102209 - - hypothetical protein RCOM_0586940 [Ricinus communis]
19 Hb_000784_060 0.1104221659 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004835_020 0.110744671 - - PREDICTED: receptor-like protein 12 [Populus euphratica]

Gene co-expression network

sample Hb_001296_060 Hb_001296_060 Hb_009522_020 Hb_009522_020 Hb_001296_060--Hb_009522_020 Hb_001206_100 Hb_001206_100 Hb_001296_060--Hb_001206_100 Hb_009421_070 Hb_009421_070 Hb_001296_060--Hb_009421_070 Hb_001098_040 Hb_001098_040 Hb_001296_060--Hb_001098_040 Hb_005183_100 Hb_005183_100 Hb_001296_060--Hb_005183_100 Hb_002942_200 Hb_002942_200 Hb_001296_060--Hb_002942_200 Hb_010222_060 Hb_010222_060 Hb_009522_020--Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_009522_020--Hb_013394_120 Hb_173387_010 Hb_173387_010 Hb_009522_020--Hb_173387_010 Hb_009522_020--Hb_001206_100 Hb_009522_020--Hb_005183_100 Hb_001206_100--Hb_005183_100 Hb_001206_100--Hb_009421_070 Hb_001206_100--Hb_002942_200 Hb_016277_030 Hb_016277_030 Hb_001206_100--Hb_016277_030 Hb_004032_190 Hb_004032_190 Hb_001206_100--Hb_004032_190 Hb_000665_210 Hb_000665_210 Hb_009421_070--Hb_000665_210 Hb_009421_070--Hb_001098_040 Hb_000784_060 Hb_000784_060 Hb_009421_070--Hb_000784_060 Hb_005842_010 Hb_005842_010 Hb_009421_070--Hb_005842_010 Hb_009421_070--Hb_004032_190 Hb_001098_040--Hb_002942_200 Hb_000329_440 Hb_000329_440 Hb_001098_040--Hb_000329_440 Hb_060253_010 Hb_060253_010 Hb_001098_040--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_001098_040--Hb_000627_050 Hb_000977_020 Hb_000977_020 Hb_001098_040--Hb_000977_020 Hb_005723_090 Hb_005723_090 Hb_005183_100--Hb_005723_090 Hb_005183_100--Hb_016277_030 Hb_005057_030 Hb_005057_030 Hb_005183_100--Hb_005057_030 Hb_000000_290 Hb_000000_290 Hb_005183_100--Hb_000000_290 Hb_008221_200 Hb_008221_200 Hb_002942_200--Hb_008221_200 Hb_002942_200--Hb_009421_070 Hb_007270_020 Hb_007270_020 Hb_002942_200--Hb_007270_020 Hb_009393_090 Hb_009393_090 Hb_002942_200--Hb_009393_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.93367 1.83567 3.61926 0 0.0495164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0382803 0 0 0.40978 4.56141

CAGE analysis