Hb_000000_290

Information

Type -
Description -
Location Contig0: 510219-513785
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13420g
description POPTRDRAFT_816499; phospholipid/glycerol acyltransferase family protein
nr
ID XP_012071774.1
description PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
swissprot
ID Q8L4Y2
description Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=LPAT4 PE=2 SV=1
trembl
ID B2LWM4
description 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Ricinus communis GN=LPAAT4 PE=2 SV=1
Gene Ontology
ID GO:0016746
description probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00070: 511555-512637 , PASA_asmbl_00071: 512798-513115 , PASA_asmbl_00072: 513198-513539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_290 0.0 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
2 Hb_000023_180 0.0633494295 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
3 Hb_000622_030 0.0794334854 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
4 Hb_005183_100 0.081614306 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
5 Hb_005723_090 0.0890039262 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002835_070 0.0944804739 - - conserved hypothetical protein [Ricinus communis]
7 Hb_016277_030 0.095277279 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
8 Hb_001158_250 0.0970610614 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001232_040 0.09944341 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
10 Hb_001950_100 0.1014064973 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
11 Hb_000963_120 0.1055669143 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
12 Hb_001097_140 0.1067942517 - - conserved hypothetical protein [Ricinus communis]
13 Hb_019925_020 0.1081918489 - - electron carrier, putative [Ricinus communis]
14 Hb_000271_130 0.1109574602 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
15 Hb_005329_030 0.1111250111 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
16 Hb_004374_030 0.1119095969 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_008001_030 0.1173491154 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
18 Hb_002973_050 0.1181858883 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
19 Hb_001976_100 0.1186466735 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
20 Hb_005057_030 0.1210077661 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000000_290 Hb_000000_290 Hb_000023_180 Hb_000023_180 Hb_000000_290--Hb_000023_180 Hb_000622_030 Hb_000622_030 Hb_000000_290--Hb_000622_030 Hb_005183_100 Hb_005183_100 Hb_000000_290--Hb_005183_100 Hb_005723_090 Hb_005723_090 Hb_000000_290--Hb_005723_090 Hb_002835_070 Hb_002835_070 Hb_000000_290--Hb_002835_070 Hb_016277_030 Hb_016277_030 Hb_000000_290--Hb_016277_030 Hb_005391_050 Hb_005391_050 Hb_000023_180--Hb_005391_050 Hb_000023_180--Hb_002835_070 Hb_005329_030 Hb_005329_030 Hb_000023_180--Hb_005329_030 Hb_001976_100 Hb_001976_100 Hb_000023_180--Hb_001976_100 Hb_001950_100 Hb_001950_100 Hb_000023_180--Hb_001950_100 Hb_001158_250 Hb_001158_250 Hb_000622_030--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_000622_030--Hb_001305_020 Hb_000622_030--Hb_005723_090 Hb_001232_040 Hb_001232_040 Hb_000622_030--Hb_001232_040 Hb_000622_030--Hb_005183_100 Hb_005183_100--Hb_005723_090 Hb_001206_100 Hb_001206_100 Hb_005183_100--Hb_001206_100 Hb_005183_100--Hb_016277_030 Hb_009522_020 Hb_009522_020 Hb_005183_100--Hb_009522_020 Hb_005057_030 Hb_005057_030 Hb_005183_100--Hb_005057_030 Hb_005723_090--Hb_005057_030 Hb_000120_480 Hb_000120_480 Hb_005723_090--Hb_000120_480 Hb_005723_090--Hb_001158_250 Hb_005723_090--Hb_001305_020 Hb_002973_050 Hb_002973_050 Hb_002835_070--Hb_002973_050 Hb_133974_010 Hb_133974_010 Hb_002835_070--Hb_133974_010 Hb_004917_020 Hb_004917_020 Hb_002835_070--Hb_004917_020 Hb_182869_010 Hb_182869_010 Hb_002835_070--Hb_182869_010 Hb_004374_030 Hb_004374_030 Hb_016277_030--Hb_004374_030 Hb_004466_090 Hb_004466_090 Hb_016277_030--Hb_004466_090 Hb_016277_030--Hb_001206_100 Hb_004032_190 Hb_004032_190 Hb_016277_030--Hb_004032_190 Hb_000784_060 Hb_000784_060 Hb_016277_030--Hb_000784_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.21203 3.03782 17.7531 0.0110093 0.0115322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0267528 0 0 1.85362 17.5291

CAGE analysis