Hb_143871_010

Information

Type -
Description -
Location Contig143871: 11611-12537
Sequence    

Annotation

kegg
ID rcu:RCOM_0939580
description Gibberellin 20 oxidase, putative (EC:1.14.11.23)
nr
ID XP_012072466.1
description PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
swissprot
ID Q0JH50
description Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1
trembl
ID A0A067KQ73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04895 PE=3 SV=1
Gene Ontology
ID GO:0005506
description flavonol synthase flavanone 3-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11568: 11623-12299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143871_010 0.0 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
2 Hb_031862_120 0.0787053042 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
3 Hb_000753_150 0.0831979546 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
4 Hb_000834_100 0.1072700289 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
5 Hb_000427_040 0.1074135769 - - Gibberellin receptor GID1, putative [Ricinus communis]
6 Hb_005051_010 0.108794598 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_000326_080 0.1134386688 - - lrr receptor protein kinase, putative [Ricinus communis]
8 Hb_000363_250 0.124705959 - - PREDICTED: pirin-like protein [Malus domestica]
9 Hb_001305_020 0.1253514615 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
10 Hb_000215_290 0.1255808894 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
11 Hb_001951_230 0.1313568045 - - PREDICTED: phytochrome E isoform X2 [Jatropha curcas]
12 Hb_000270_750 0.13383698 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
13 Hb_005725_160 0.1344095378 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
14 Hb_002902_070 0.1349412604 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
15 Hb_032779_010 0.1367226597 - - unnamed protein product [Vitis vinifera]
16 Hb_002344_080 0.1368450483 - - PREDICTED: protein YLS2-like [Populus euphratica]
17 Hb_000369_040 0.1390533551 - - Ankyrin repeat family protein, putative [Theobroma cacao]
18 Hb_000252_260 0.1395749802 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
19 Hb_005271_180 0.1402507654 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
20 Hb_000237_160 0.1417292876 - - BEL1-like homeodomain protein 1 [Morus notabilis]

Gene co-expression network

sample Hb_143871_010 Hb_143871_010 Hb_031862_120 Hb_031862_120 Hb_143871_010--Hb_031862_120 Hb_000753_150 Hb_000753_150 Hb_143871_010--Hb_000753_150 Hb_000834_100 Hb_000834_100 Hb_143871_010--Hb_000834_100 Hb_000427_040 Hb_000427_040 Hb_143871_010--Hb_000427_040 Hb_005051_010 Hb_005051_010 Hb_143871_010--Hb_005051_010 Hb_000326_080 Hb_000326_080 Hb_143871_010--Hb_000326_080 Hb_000941_090 Hb_000941_090 Hb_031862_120--Hb_000941_090 Hb_031862_120--Hb_005051_010 Hb_031862_120--Hb_000753_150 Hb_031862_120--Hb_000427_040 Hb_000272_030 Hb_000272_030 Hb_031862_120--Hb_000272_030 Hb_000237_160 Hb_000237_160 Hb_000753_150--Hb_000237_160 Hb_000237_170 Hb_000237_170 Hb_000753_150--Hb_000237_170 Hb_001195_250 Hb_001195_250 Hb_000753_150--Hb_001195_250 Hb_000753_150--Hb_000326_080 Hb_002902_070 Hb_002902_070 Hb_000834_100--Hb_002902_070 Hb_001305_020 Hb_001305_020 Hb_000834_100--Hb_001305_020 Hb_003858_060 Hb_003858_060 Hb_000834_100--Hb_003858_060 Hb_000834_100--Hb_000427_040 Hb_000069_540 Hb_000069_540 Hb_000834_100--Hb_000069_540 Hb_004204_220 Hb_004204_220 Hb_000834_100--Hb_004204_220 Hb_032779_010 Hb_032779_010 Hb_000427_040--Hb_032779_010 Hb_000427_040--Hb_005051_010 Hb_000427_040--Hb_002902_070 Hb_014700_030 Hb_014700_030 Hb_000427_040--Hb_014700_030 Hb_000427_040--Hb_001305_020 Hb_000427_040--Hb_000069_540 Hb_005051_010--Hb_001305_020 Hb_005051_010--Hb_014700_030 Hb_005051_010--Hb_032779_010 Hb_000622_030 Hb_000622_030 Hb_005051_010--Hb_000622_030 Hb_000434_060 Hb_000434_060 Hb_005051_010--Hb_000434_060 Hb_001486_100 Hb_001486_100 Hb_000326_080--Hb_001486_100 Hb_000252_260 Hb_000252_260 Hb_000326_080--Hb_000252_260 Hb_000326_080--Hb_031862_120 Hb_001951_230 Hb_001951_230 Hb_000326_080--Hb_001951_230 Hb_002740_100 Hb_002740_100 Hb_000326_080--Hb_002740_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179106 21.5551 10.1864 22.882 0.672937 0.792566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.292062 0.153031 0 5.54608 30.6222

CAGE analysis