Hb_000237_160

Information

Type -
Description -
Location Contig237: 182877-190877
Sequence    

Annotation

kegg
ID cic:CICLE_v10003905mg
description hypothetical protein
nr
ID XP_010093716.1
description BEL1-like homeodomain protein 1 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9SP11
description BEL1-like homeodomain protein 1 OS=Morus notabilis GN=L484_000398 PE=4 SV=1
Gene Ontology
ID GO:0003677
description bel1-like homeodomain protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24789: 183033-190535 , PASA_asmbl_24790: 188982-189428 , PASA_asmbl_24791: 183903-188730 , PASA_asmbl_24793: 183148-190535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_160 0.0 - - BEL1-like homeodomain protein 1 [Morus notabilis]
2 Hb_000753_150 0.1043736744 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
3 Hb_003517_090 0.1106099347 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
4 Hb_002983_090 0.1161110678 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
5 Hb_003177_090 0.1214647237 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
6 Hb_000237_170 0.1246180371 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
7 Hb_000959_010 0.1305568372 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
8 Hb_046117_030 0.1316717119 - - sialyltransferase, putative [Ricinus communis]
9 Hb_001866_090 0.1354223381 - - hypothetical protein VITISV_023491 [Vitis vinifera]
10 Hb_000594_130 0.1368952794 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_143871_010 0.1417292876 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
12 Hb_011472_050 0.1424667607 - - -
13 Hb_008461_070 0.1450615303 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
14 Hb_005183_040 0.1462895292 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
15 Hb_002636_070 0.1471596537 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
16 Hb_049293_010 0.1475066186 - - kinase, putative [Ricinus communis]
17 Hb_001195_250 0.1509092636 - - lrr receptor protein kinase, putative [Ricinus communis]
18 Hb_001486_100 0.1511686389 - - tubulin alpha chain, putative [Ricinus communis]
19 Hb_020400_020 0.1521307589 - - starch synthase isoform II [Manihot esculenta]
20 Hb_001468_040 0.1522815251 - - Uncharacterized protein TCM_024268 [Theobroma cacao]

Gene co-expression network

sample Hb_000237_160 Hb_000237_160 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_003517_090 Hb_003517_090 Hb_000237_160--Hb_003517_090 Hb_002983_090 Hb_002983_090 Hb_000237_160--Hb_002983_090 Hb_003177_090 Hb_003177_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010 Hb_143871_010 Hb_143871_010 Hb_000753_150--Hb_143871_010 Hb_031862_120 Hb_031862_120 Hb_000753_150--Hb_031862_120 Hb_000753_150--Hb_000237_170 Hb_001195_250 Hb_001195_250 Hb_000753_150--Hb_001195_250 Hb_000326_080 Hb_000326_080 Hb_000753_150--Hb_000326_080 Hb_000363_050 Hb_000363_050 Hb_003517_090--Hb_000363_050 Hb_083242_020 Hb_083242_020 Hb_003517_090--Hb_083242_020 Hb_001514_150 Hb_001514_150 Hb_003517_090--Hb_001514_150 Hb_011472_050 Hb_011472_050 Hb_003517_090--Hb_011472_050 Hb_004605_020 Hb_004605_020 Hb_003517_090--Hb_004605_020 Hb_001468_040 Hb_001468_040 Hb_002983_090--Hb_001468_040 Hb_008461_070 Hb_008461_070 Hb_002983_090--Hb_008461_070 Hb_158534_010 Hb_158534_010 Hb_002983_090--Hb_158534_010 Hb_046117_030 Hb_046117_030 Hb_002983_090--Hb_046117_030 Hb_000033_010 Hb_000033_010 Hb_002983_090--Hb_000033_010 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_001689_030 Hb_001689_030 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200 Hb_000237_170--Hb_001468_040 Hb_000103_230 Hb_000103_230 Hb_000237_170--Hb_000103_230 Hb_022693_080 Hb_022693_080 Hb_000237_170--Hb_022693_080 Hb_000237_170--Hb_011472_050 Hb_000959_010--Hb_143629_200 Hb_001486_100 Hb_001486_100 Hb_000959_010--Hb_001486_100 Hb_000959_010--Hb_006040_170 Hb_005305_030 Hb_005305_030 Hb_000959_010--Hb_005305_030 Hb_007237_010 Hb_007237_010 Hb_000959_010--Hb_007237_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.838698 27.8177 12.6215 26.4014 1.44805 1.37068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.56116 1.50508 0.812985 14.139 63.1657

CAGE analysis