Hb_046117_030

Information

Type -
Description -
Location Contig46117: 17846-19120
Sequence    

Annotation

kegg
ID rcu:RCOM_1280300
description sialyltransferase, putative (EC:2.4.99.4)
nr
ID XP_002523786.1
description sialyltransferase, putative [Ricinus communis]
swissprot
ID P54751
description CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 OS=Mus musculus GN=St3gal1 PE=2 SV=1
trembl
ID B9SCR7
description Sialyltransferase, putative OS=Ricinus communis GN=RCOM_1280300 PE=4 SV=1
Gene Ontology
ID GO:0003836
description cmp-n-acetylneuraminate-beta-galactosamide-alpha- -sialyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046117_030 0.0 - - sialyltransferase, putative [Ricinus communis]
2 Hb_000033_010 0.1145935557 - - Protein MLO, putative [Ricinus communis]
3 Hb_000130_480 0.1299004163 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
4 Hb_002983_090 0.1313837722 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
5 Hb_000237_160 0.1316717119 - - BEL1-like homeodomain protein 1 [Morus notabilis]
6 Hb_094437_020 0.1340152948 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_000594_130 0.1355880441 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000917_210 0.1365790294 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008461_070 0.1390432645 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
10 Hb_003142_080 0.1391409783 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_006198_040 0.1423506855 - - conserved hypothetical protein [Ricinus communis]
12 Hb_029223_010 0.1460921293 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
13 Hb_000309_070 0.146647698 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
14 Hb_000392_490 0.1471811105 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
15 Hb_003097_220 0.1481401446 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
16 Hb_000836_030 0.1500411375 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
17 Hb_001195_370 0.1506091902 - - -
18 Hb_000329_080 0.1545040954 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
19 Hb_000959_010 0.1546985986 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
20 Hb_002636_070 0.1551348247 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]

Gene co-expression network

sample Hb_046117_030 Hb_046117_030 Hb_000033_010 Hb_000033_010 Hb_046117_030--Hb_000033_010 Hb_000130_480 Hb_000130_480 Hb_046117_030--Hb_000130_480 Hb_002983_090 Hb_002983_090 Hb_046117_030--Hb_002983_090 Hb_000237_160 Hb_000237_160 Hb_046117_030--Hb_000237_160 Hb_094437_020 Hb_094437_020 Hb_046117_030--Hb_094437_020 Hb_000594_130 Hb_000594_130 Hb_046117_030--Hb_000594_130 Hb_006198_040 Hb_006198_040 Hb_000033_010--Hb_006198_040 Hb_003142_080 Hb_003142_080 Hb_000033_010--Hb_003142_080 Hb_001652_130 Hb_001652_130 Hb_000033_010--Hb_001652_130 Hb_002636_070 Hb_002636_070 Hb_000033_010--Hb_002636_070 Hb_004724_260 Hb_004724_260 Hb_000033_010--Hb_004724_260 Hb_029223_010 Hb_029223_010 Hb_000033_010--Hb_029223_010 Hb_002635_010 Hb_002635_010 Hb_000130_480--Hb_002635_010 Hb_000130_480--Hb_006198_040 Hb_004607_160 Hb_004607_160 Hb_000130_480--Hb_004607_160 Hb_124579_020 Hb_124579_020 Hb_000130_480--Hb_124579_020 Hb_000130_480--Hb_003142_080 Hb_000836_030 Hb_000836_030 Hb_000130_480--Hb_000836_030 Hb_002983_090--Hb_000237_160 Hb_001468_040 Hb_001468_040 Hb_002983_090--Hb_001468_040 Hb_008461_070 Hb_008461_070 Hb_002983_090--Hb_008461_070 Hb_158534_010 Hb_158534_010 Hb_002983_090--Hb_158534_010 Hb_002983_090--Hb_000033_010 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_003517_090 Hb_003517_090 Hb_000237_160--Hb_003517_090 Hb_003177_090 Hb_003177_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010 Hb_003858_060 Hb_003858_060 Hb_094437_020--Hb_003858_060 Hb_000207_240 Hb_000207_240 Hb_094437_020--Hb_000207_240 Hb_006916_140 Hb_006916_140 Hb_094437_020--Hb_006916_140 Hb_000856_210 Hb_000856_210 Hb_094437_020--Hb_000856_210 Hb_000392_490 Hb_000392_490 Hb_094437_020--Hb_000392_490 Hb_004204_220 Hb_004204_220 Hb_094437_020--Hb_004204_220 Hb_000917_210 Hb_000917_210 Hb_000594_130--Hb_000917_210 Hb_000594_130--Hb_003177_090 Hb_000594_130--Hb_000130_480 Hb_000594_130--Hb_000237_160 Hb_002110_090 Hb_002110_090 Hb_000594_130--Hb_002110_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.338351 3.29471 2.97926 7.77845 0.210105 0.131701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.264233 0.237553 0.277021 4.53904 15.5368

CAGE analysis