Hb_000207_240

Information

Type -
Description -
Location Contig207: 330596-331204
Sequence    

Annotation

kegg
ID rcu:RCOM_0686540
description hypothetical protein
nr
ID XP_002526836.1
description hypothetical protein RCOM_0686540 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLG7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_240 0.0 - - hypothetical protein RCOM_0686540 [Ricinus communis]
2 Hb_000856_210 0.068040126 - - nitrate transporter, putative [Ricinus communis]
3 Hb_001097_140 0.0734690776 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003714_030 0.0855820188 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_006351_120 0.0902669486 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
6 Hb_019925_020 0.0974389022 - - electron carrier, putative [Ricinus communis]
7 Hb_001396_130 0.1080441141 - - conserved hypothetical protein [Ricinus communis]
8 Hb_094437_020 0.1098231595 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_003858_060 0.1225840609 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
10 Hb_000000_290 0.1263989841 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
11 Hb_004204_220 0.1293232606 - - -
12 Hb_080797_010 0.1304850365 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
13 Hb_186765_010 0.1333516483 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
14 Hb_044380_010 0.1360588968 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
15 Hb_125181_010 0.1390577699 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
16 Hb_006916_140 0.1399596329 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
17 Hb_000963_120 0.1414058607 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
18 Hb_005723_090 0.1420745008 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002876_280 0.1429690849 - - hypothetical protein RCOM_0686540 [Ricinus communis]
20 Hb_000023_180 0.1446687489 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000207_240 Hb_000207_240 Hb_000856_210 Hb_000856_210 Hb_000207_240--Hb_000856_210 Hb_001097_140 Hb_001097_140 Hb_000207_240--Hb_001097_140 Hb_003714_030 Hb_003714_030 Hb_000207_240--Hb_003714_030 Hb_006351_120 Hb_006351_120 Hb_000207_240--Hb_006351_120 Hb_019925_020 Hb_019925_020 Hb_000207_240--Hb_019925_020 Hb_001396_130 Hb_001396_130 Hb_000207_240--Hb_001396_130 Hb_000856_210--Hb_019925_020 Hb_000856_210--Hb_006351_120 Hb_002876_280 Hb_002876_280 Hb_000856_210--Hb_002876_280 Hb_003858_060 Hb_003858_060 Hb_000856_210--Hb_003858_060 Hb_094437_020 Hb_094437_020 Hb_000856_210--Hb_094437_020 Hb_080797_010 Hb_080797_010 Hb_001097_140--Hb_080797_010 Hb_001097_140--Hb_003714_030 Hb_001269_540 Hb_001269_540 Hb_001097_140--Hb_001269_540 Hb_186765_010 Hb_186765_010 Hb_001097_140--Hb_186765_010 Hb_004837_080 Hb_004837_080 Hb_001097_140--Hb_004837_080 Hb_044380_010 Hb_044380_010 Hb_003714_030--Hb_044380_010 Hb_001248_140 Hb_001248_140 Hb_003714_030--Hb_001248_140 Hb_003714_030--Hb_001396_130 Hb_004530_010 Hb_004530_010 Hb_003714_030--Hb_004530_010 Hb_006351_120--Hb_019925_020 Hb_006351_120--Hb_094437_020 Hb_125181_010 Hb_125181_010 Hb_006351_120--Hb_125181_010 Hb_006351_120--Hb_001396_130 Hb_000000_290 Hb_000000_290 Hb_019925_020--Hb_000000_290 Hb_005018_030 Hb_005018_030 Hb_019925_020--Hb_005018_030 Hb_000023_180 Hb_000023_180 Hb_019925_020--Hb_000023_180 Hb_001396_130--Hb_186765_010 Hb_001976_100 Hb_001976_100 Hb_001396_130--Hb_001976_100 Hb_000377_130 Hb_000377_130 Hb_001396_130--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_001396_130--Hb_006755_030 Hb_001396_130--Hb_044380_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.28951 0.370587 3.71187 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.890598 5.72216

CAGE analysis