Hb_125181_010

Information

Type -
Description -
Location Contig125181: 12-590
Sequence    

Annotation

kegg
ID pda:103699620
description uncharacterized LOC103699620
nr
ID XP_009623963.1
description PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A061EWB4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125181_010 0.0 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
2 Hb_001221_250 0.071966222 - - -
3 Hb_019925_010 0.0954450667 - - PREDICTED: long-chain-alcohol oxidase FAO4A-like [Jatropha curcas]
4 Hb_000193_090 0.1005195679 - - cysteine protease, putative [Ricinus communis]
5 Hb_007590_030 0.109651592 - - PREDICTED: iridoid synthase [Jatropha curcas]
6 Hb_044380_010 0.1240141722 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
7 Hb_006351_120 0.1260979556 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
8 Hb_007295_020 0.1313058395 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
9 Hb_001396_130 0.1324563832 - - conserved hypothetical protein [Ricinus communis]
10 Hb_112791_030 0.1347344891 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
11 Hb_145080_010 0.1352953619 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
12 Hb_000207_240 0.1390577699 - - hypothetical protein RCOM_0686540 [Ricinus communis]
13 Hb_011358_010 0.1426313614 - - -
14 Hb_003714_030 0.1510701458 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
15 Hb_037519_010 0.1524070987 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
16 Hb_001478_030 0.1616270359 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001097_140 0.1626843042 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000856_210 0.1634757628 - - nitrate transporter, putative [Ricinus communis]
19 Hb_016564_050 0.1657080007 - - -
20 Hb_019925_020 0.1661352737 - - electron carrier, putative [Ricinus communis]

Gene co-expression network

sample Hb_125181_010 Hb_125181_010 Hb_001221_250 Hb_001221_250 Hb_125181_010--Hb_001221_250 Hb_019925_010 Hb_019925_010 Hb_125181_010--Hb_019925_010 Hb_000193_090 Hb_000193_090 Hb_125181_010--Hb_000193_090 Hb_007590_030 Hb_007590_030 Hb_125181_010--Hb_007590_030 Hb_044380_010 Hb_044380_010 Hb_125181_010--Hb_044380_010 Hb_006351_120 Hb_006351_120 Hb_125181_010--Hb_006351_120 Hb_001221_250--Hb_000193_090 Hb_001221_250--Hb_019925_010 Hb_001221_250--Hb_007590_030 Hb_004291_060 Hb_004291_060 Hb_001221_250--Hb_004291_060 Hb_001221_250--Hb_044380_010 Hb_000090_010 Hb_000090_010 Hb_019925_010--Hb_000090_010 Hb_001478_030 Hb_001478_030 Hb_019925_010--Hb_001478_030 Hb_006483_020 Hb_006483_020 Hb_019925_010--Hb_006483_020 Hb_101705_040 Hb_101705_040 Hb_019925_010--Hb_101705_040 Hb_000193_090--Hb_007590_030 Hb_000193_090--Hb_004291_060 Hb_011358_010 Hb_011358_010 Hb_000193_090--Hb_011358_010 Hb_112791_030 Hb_112791_030 Hb_000193_090--Hb_112791_030 Hb_002447_100 Hb_002447_100 Hb_007590_030--Hb_002447_100 Hb_004530_010 Hb_004530_010 Hb_007590_030--Hb_004530_010 Hb_007590_030--Hb_112791_030 Hb_003714_030 Hb_003714_030 Hb_044380_010--Hb_003714_030 Hb_044380_010--Hb_004530_010 Hb_186765_010 Hb_186765_010 Hb_044380_010--Hb_186765_010 Hb_001396_130 Hb_001396_130 Hb_044380_010--Hb_001396_130 Hb_011519_040 Hb_011519_040 Hb_044380_010--Hb_011519_040 Hb_001248_140 Hb_001248_140 Hb_044380_010--Hb_001248_140 Hb_000856_210 Hb_000856_210 Hb_006351_120--Hb_000856_210 Hb_000207_240 Hb_000207_240 Hb_006351_120--Hb_000207_240 Hb_019925_020 Hb_019925_020 Hb_006351_120--Hb_019925_020 Hb_094437_020 Hb_094437_020 Hb_006351_120--Hb_094437_020 Hb_006351_120--Hb_001396_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.046982 0 0.194278 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0344054 0.322093

CAGE analysis