Hb_001221_250

Information

Type -
Description -
Location Contig1221: 177709-177980
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06734: 176693-176948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_250 0.0 - - -
2 Hb_000193_090 0.0707725538 - - cysteine protease, putative [Ricinus communis]
3 Hb_125181_010 0.071966222 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
4 Hb_019925_010 0.0721146039 - - PREDICTED: long-chain-alcohol oxidase FAO4A-like [Jatropha curcas]
5 Hb_007590_030 0.1091786654 - - PREDICTED: iridoid synthase [Jatropha curcas]
6 Hb_004291_060 0.1175732756 - - hypothetical protein F775_42457 [Aegilops tauschii]
7 Hb_044380_010 0.1474819803 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
8 Hb_001478_030 0.1515646511 - - conserved hypothetical protein [Ricinus communis]
9 Hb_028818_020 0.1545795847 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
10 Hb_101705_040 0.1579123804 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000090_010 0.1657599898 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
12 Hb_000155_230 0.1678170474 - - rac gtpase, putative [Ricinus communis]
13 Hb_004530_010 0.1687318255 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
14 Hb_011358_010 0.1696654661 - - -
15 Hb_140595_030 0.1698162346 - - -
16 Hb_006351_120 0.1699575014 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
17 Hb_006483_020 0.1723314229 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
18 Hb_112791_030 0.1726911916 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
19 Hb_145080_010 0.1759425143 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
20 Hb_000207_240 0.1773385359 - - hypothetical protein RCOM_0686540 [Ricinus communis]

Gene co-expression network

sample Hb_001221_250 Hb_001221_250 Hb_000193_090 Hb_000193_090 Hb_001221_250--Hb_000193_090 Hb_125181_010 Hb_125181_010 Hb_001221_250--Hb_125181_010 Hb_019925_010 Hb_019925_010 Hb_001221_250--Hb_019925_010 Hb_007590_030 Hb_007590_030 Hb_001221_250--Hb_007590_030 Hb_004291_060 Hb_004291_060 Hb_001221_250--Hb_004291_060 Hb_044380_010 Hb_044380_010 Hb_001221_250--Hb_044380_010 Hb_000193_090--Hb_007590_030 Hb_000193_090--Hb_125181_010 Hb_000193_090--Hb_004291_060 Hb_011358_010 Hb_011358_010 Hb_000193_090--Hb_011358_010 Hb_112791_030 Hb_112791_030 Hb_000193_090--Hb_112791_030 Hb_125181_010--Hb_019925_010 Hb_125181_010--Hb_007590_030 Hb_125181_010--Hb_044380_010 Hb_006351_120 Hb_006351_120 Hb_125181_010--Hb_006351_120 Hb_000090_010 Hb_000090_010 Hb_019925_010--Hb_000090_010 Hb_001478_030 Hb_001478_030 Hb_019925_010--Hb_001478_030 Hb_006483_020 Hb_006483_020 Hb_019925_010--Hb_006483_020 Hb_101705_040 Hb_101705_040 Hb_019925_010--Hb_101705_040 Hb_002447_100 Hb_002447_100 Hb_007590_030--Hb_002447_100 Hb_004530_010 Hb_004530_010 Hb_007590_030--Hb_004530_010 Hb_007590_030--Hb_112791_030 Hb_002474_020 Hb_002474_020 Hb_004291_060--Hb_002474_020 Hb_003559_010 Hb_003559_010 Hb_004291_060--Hb_003559_010 Hb_067971_010 Hb_067971_010 Hb_004291_060--Hb_067971_010 Hb_004291_060--Hb_007590_030 Hb_003714_030 Hb_003714_030 Hb_044380_010--Hb_003714_030 Hb_044380_010--Hb_004530_010 Hb_186765_010 Hb_186765_010 Hb_044380_010--Hb_186765_010 Hb_001396_130 Hb_001396_130 Hb_044380_010--Hb_001396_130 Hb_011519_040 Hb_011519_040 Hb_044380_010--Hb_011519_040 Hb_001248_140 Hb_001248_140 Hb_044380_010--Hb_001248_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.914082 0 4.19699 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.454353 8.62992

CAGE analysis