Hb_067971_010

Information

Type -
Description -
Location Contig67971: 12-593
Sequence    

Annotation

kegg
ID cam:101498181
description genome polyprotein-like
nr
ID AHC13197.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QEC8
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067971_010 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_003559_010 0.0621564859 - - Peroxidase 27 precursor, putative [Ricinus communis]
3 Hb_032050_030 0.095324856 - - C, putative [Ricinus communis]
4 Hb_030370_080 0.0953258931 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
5 Hb_002112_030 0.0953998238 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
6 Hb_153625_010 0.0961520231 - - PREDICTED: 21 kDa protein [Populus euphratica]
7 Hb_000152_400 0.096554775 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
8 Hb_020332_020 0.0969786795 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
9 Hb_100648_020 0.0973303515 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
10 Hb_004093_070 0.0977940137 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
11 Hb_179061_010 0.1000301816 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
12 Hb_000202_110 0.1012352694 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
13 Hb_003060_130 0.1014015307 - - PREDICTED: protein P21-like [Jatropha curcas]
14 Hb_000330_110 0.1045257496 - - -
15 Hb_000152_470 0.1051596172 - - -
16 Hb_001148_010 0.1078744359 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_055467_010 0.1093087756 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
18 Hb_003653_040 0.1093931531 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
19 Hb_135174_010 0.1117194594 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
20 Hb_004528_030 0.1117323373 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_067971_010 Hb_067971_010 Hb_003559_010 Hb_003559_010 Hb_067971_010--Hb_003559_010 Hb_032050_030 Hb_032050_030 Hb_067971_010--Hb_032050_030 Hb_030370_080 Hb_030370_080 Hb_067971_010--Hb_030370_080 Hb_002112_030 Hb_002112_030 Hb_067971_010--Hb_002112_030 Hb_153625_010 Hb_153625_010 Hb_067971_010--Hb_153625_010 Hb_000152_400 Hb_000152_400 Hb_067971_010--Hb_000152_400 Hb_000758_060 Hb_000758_060 Hb_003559_010--Hb_000758_060 Hb_000920_340 Hb_000920_340 Hb_003559_010--Hb_000920_340 Hb_002474_020 Hb_002474_020 Hb_003559_010--Hb_002474_020 Hb_004291_060 Hb_004291_060 Hb_003559_010--Hb_004291_060 Hb_002764_020 Hb_002764_020 Hb_003559_010--Hb_002764_020 Hb_032050_030--Hb_000152_400 Hb_020332_020 Hb_020332_020 Hb_032050_030--Hb_020332_020 Hb_032050_030--Hb_030370_080 Hb_032050_030--Hb_002112_030 Hb_032050_030--Hb_153625_010 Hb_000202_110 Hb_000202_110 Hb_032050_030--Hb_000202_110 Hb_030370_080--Hb_002112_030 Hb_030370_080--Hb_153625_010 Hb_100648_020 Hb_100648_020 Hb_030370_080--Hb_100648_020 Hb_004093_070 Hb_004093_070 Hb_030370_080--Hb_004093_070 Hb_179061_010 Hb_179061_010 Hb_030370_080--Hb_179061_010 Hb_002112_030--Hb_153625_010 Hb_002112_030--Hb_100648_020 Hb_002112_030--Hb_004093_070 Hb_002112_030--Hb_179061_010 Hb_153625_010--Hb_100648_020 Hb_153625_010--Hb_004093_070 Hb_153625_010--Hb_179061_010 Hb_000152_400--Hb_020332_020 Hb_000152_400--Hb_000202_110 Hb_003060_130 Hb_003060_130 Hb_000152_400--Hb_003060_130 Hb_000152_400--Hb_030370_080 Hb_000152_400--Hb_002112_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0386218 0 0.514009 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.59935

CAGE analysis