Hb_100648_020

Information

Type -
Description -
Location Contig100648: 517-1071
Sequence    

Annotation

kegg
ID cic:CICLE_v10033628mg
description hypothetical protein
nr
ID XP_006436321.1
description hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TII4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033628mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10033628mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100648_020 0.0 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
2 Hb_004093_070 0.002063693 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_153625_010 0.0064353716 - - PREDICTED: 21 kDa protein [Populus euphratica]
4 Hb_179061_010 0.010257404 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
5 Hb_002112_030 0.012756175 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
6 Hb_030370_080 0.0136576833 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
7 Hb_000330_110 0.0226298006 - - -
8 Hb_000152_470 0.0241393657 - - -
9 Hb_032050_030 0.0285223257 - - C, putative [Ricinus communis]
10 Hb_055467_010 0.0331766196 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
11 Hb_000152_400 0.0382153223 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
12 Hb_020332_020 0.0404804193 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
13 Hb_003003_060 0.0419381963 - - -
14 Hb_004643_050 0.0443258699 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
15 Hb_000202_110 0.0561056776 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
16 Hb_003060_130 0.0565868884 - - PREDICTED: protein P21-like [Jatropha curcas]
17 Hb_001900_050 0.0614346287 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
18 Hb_000275_030 0.0650357108 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001148_010 0.0723117038 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_003623_060 0.0750747048 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_100648_020 Hb_100648_020 Hb_004093_070 Hb_004093_070 Hb_100648_020--Hb_004093_070 Hb_153625_010 Hb_153625_010 Hb_100648_020--Hb_153625_010 Hb_179061_010 Hb_179061_010 Hb_100648_020--Hb_179061_010 Hb_002112_030 Hb_002112_030 Hb_100648_020--Hb_002112_030 Hb_030370_080 Hb_030370_080 Hb_100648_020--Hb_030370_080 Hb_000330_110 Hb_000330_110 Hb_100648_020--Hb_000330_110 Hb_004093_070--Hb_179061_010 Hb_004093_070--Hb_153625_010 Hb_004093_070--Hb_002112_030 Hb_004093_070--Hb_030370_080 Hb_004093_070--Hb_000330_110 Hb_153625_010--Hb_002112_030 Hb_153625_010--Hb_030370_080 Hb_153625_010--Hb_179061_010 Hb_032050_030 Hb_032050_030 Hb_153625_010--Hb_032050_030 Hb_179061_010--Hb_000330_110 Hb_000152_470 Hb_000152_470 Hb_179061_010--Hb_000152_470 Hb_055467_010 Hb_055467_010 Hb_179061_010--Hb_055467_010 Hb_002112_030--Hb_030370_080 Hb_002112_030--Hb_032050_030 Hb_002112_030--Hb_179061_010 Hb_030370_080--Hb_032050_030 Hb_030370_080--Hb_179061_010 Hb_000330_110--Hb_000152_470 Hb_000330_110--Hb_055467_010 Hb_003003_060 Hb_003003_060 Hb_000330_110--Hb_003003_060 Hb_004643_050 Hb_004643_050 Hb_000330_110--Hb_004643_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0673823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.187041

CAGE analysis