Hb_179061_010

Information

Type -
Description -
Location Contig179061: 22-554
Sequence    

Annotation

kegg
ID cit:102606756
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID KDP44811.1
description hypothetical protein JCGZ_01311 [Jatropha curcas]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A067L8N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01311 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179061_010 0.0 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
2 Hb_004093_070 0.0081938037 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_100648_020 0.010257404 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
4 Hb_000330_110 0.0123738901 - - -
5 Hb_000152_470 0.0138837458 - - -
6 Hb_153625_010 0.0166921799 - - PREDICTED: 21 kDa protein [Populus euphratica]
7 Hb_055467_010 0.0229232169 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
8 Hb_002112_030 0.0230119371 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
9 Hb_030370_080 0.0239132583 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
10 Hb_003003_060 0.0316877059 - - -
11 Hb_004643_050 0.0340763001 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
12 Hb_032050_030 0.0387734074 - - C, putative [Ricinus communis]
13 Hb_000152_400 0.0484619933 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
14 Hb_020332_020 0.0507258847 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_001900_050 0.0511931902 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
16 Hb_000275_030 0.0547963174 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003623_060 0.0648416026 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000062_040 0.065752855 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
19 Hb_000202_110 0.0663409512 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
20 Hb_003060_130 0.0668217947 - - PREDICTED: protein P21-like [Jatropha curcas]

Gene co-expression network

sample Hb_179061_010 Hb_179061_010 Hb_004093_070 Hb_004093_070 Hb_179061_010--Hb_004093_070 Hb_100648_020 Hb_100648_020 Hb_179061_010--Hb_100648_020 Hb_000330_110 Hb_000330_110 Hb_179061_010--Hb_000330_110 Hb_000152_470 Hb_000152_470 Hb_179061_010--Hb_000152_470 Hb_153625_010 Hb_153625_010 Hb_179061_010--Hb_153625_010 Hb_055467_010 Hb_055467_010 Hb_179061_010--Hb_055467_010 Hb_004093_070--Hb_100648_020 Hb_004093_070--Hb_153625_010 Hb_002112_030 Hb_002112_030 Hb_004093_070--Hb_002112_030 Hb_030370_080 Hb_030370_080 Hb_004093_070--Hb_030370_080 Hb_004093_070--Hb_000330_110 Hb_100648_020--Hb_153625_010 Hb_100648_020--Hb_002112_030 Hb_100648_020--Hb_030370_080 Hb_100648_020--Hb_000330_110 Hb_000330_110--Hb_000152_470 Hb_000330_110--Hb_055467_010 Hb_003003_060 Hb_003003_060 Hb_000330_110--Hb_003003_060 Hb_004643_050 Hb_004643_050 Hb_000330_110--Hb_004643_050 Hb_000152_470--Hb_055467_010 Hb_000152_470--Hb_003003_060 Hb_000152_470--Hb_004643_050 Hb_000152_470--Hb_004093_070 Hb_153625_010--Hb_002112_030 Hb_153625_010--Hb_030370_080 Hb_032050_030 Hb_032050_030 Hb_153625_010--Hb_032050_030 Hb_055467_010--Hb_003003_060 Hb_055467_010--Hb_004643_050 Hb_001900_050 Hb_001900_050 Hb_055467_010--Hb_001900_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0754093 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.19824

CAGE analysis