Hb_004643_050

Information

Type -
Description -
Location Contig4643: 30438-34658
Sequence    

Annotation

kegg
ID rcu:RCOM_2064130
description hypothetical protein
nr
ID KJB09782.1
description hypothetical protein B456_001G165500 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2LZF3
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G165500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004643_050 0.0 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
2 Hb_003003_060 0.0023898336 - - -
3 Hb_055467_010 0.0111573132 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
4 Hb_001900_050 0.017130919 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
5 Hb_000152_470 0.0201972431 - - -
6 Hb_000275_030 0.0207381205 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000330_110 0.0217069095 - - -
8 Hb_003623_060 0.030796754 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000062_040 0.0317093598 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
10 Hb_179061_010 0.0340763001 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
11 Hb_004093_070 0.0422641524 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
12 Hb_100648_020 0.0443258699 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
13 Hb_002527_020 0.0457020473 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
14 Hb_002857_010 0.0472196666 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
15 Hb_043346_010 0.0494301426 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
16 Hb_153625_010 0.0507537626 - - PREDICTED: 21 kDa protein [Populus euphratica]
17 Hb_001695_050 0.0523517318 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
18 Hb_002112_030 0.057065239 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
19 Hb_030370_080 0.0579652542 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
20 Hb_008493_010 0.0594194705 - - hypothetical protein JCGZ_10529 [Jatropha curcas]

Gene co-expression network

sample Hb_004643_050 Hb_004643_050 Hb_003003_060 Hb_003003_060 Hb_004643_050--Hb_003003_060 Hb_055467_010 Hb_055467_010 Hb_004643_050--Hb_055467_010 Hb_001900_050 Hb_001900_050 Hb_004643_050--Hb_001900_050 Hb_000152_470 Hb_000152_470 Hb_004643_050--Hb_000152_470 Hb_000275_030 Hb_000275_030 Hb_004643_050--Hb_000275_030 Hb_000330_110 Hb_000330_110 Hb_004643_050--Hb_000330_110 Hb_003003_060--Hb_055467_010 Hb_003003_060--Hb_000152_470 Hb_003003_060--Hb_000330_110 Hb_003003_060--Hb_001900_050 Hb_003003_060--Hb_000275_030 Hb_055467_010--Hb_000152_470 Hb_055467_010--Hb_000330_110 Hb_179061_010 Hb_179061_010 Hb_055467_010--Hb_179061_010 Hb_055467_010--Hb_001900_050 Hb_001900_050--Hb_000275_030 Hb_003623_060 Hb_003623_060 Hb_001900_050--Hb_003623_060 Hb_000062_040 Hb_000062_040 Hb_001900_050--Hb_000062_040 Hb_000152_470--Hb_000330_110 Hb_000152_470--Hb_179061_010 Hb_004093_070 Hb_004093_070 Hb_000152_470--Hb_004093_070 Hb_000275_030--Hb_003623_060 Hb_000275_030--Hb_000062_040 Hb_002527_020 Hb_002527_020 Hb_000275_030--Hb_002527_020 Hb_000330_110--Hb_179061_010 Hb_000330_110--Hb_004093_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0451492 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0995075

CAGE analysis