Hb_000062_040

Information

Type -
Description -
Location Contig62: 42254-43410
Sequence    

Annotation

kegg
ID cit:102625512
description uncharacterized LOC102625512
nr
ID XP_012441038.1
description PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TX68
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G352100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_040 0.0 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
2 Hb_003623_060 0.0009129903 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000275_030 0.0109743826 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002527_020 0.0140013105 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
5 Hb_001900_050 0.0145819035 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
6 Hb_002857_010 0.0155201683 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
7 Hb_043346_010 0.0177325526 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
8 Hb_001695_050 0.0206568529 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
9 Hb_008493_010 0.0277320302 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
10 Hb_004643_050 0.0317093598 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
11 Hb_003003_060 0.0340980407 - - -
12 Hb_055467_010 0.0428598452 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
13 Hb_000152_470 0.0518914915 - - -
14 Hb_000330_110 0.0533995288 - - -
15 Hb_159229_030 0.0624519401 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
16 Hb_091378_010 0.0631089686 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_002457_010 0.0643824188 - - polyprotein [Oryza australiensis]
18 Hb_160190_010 0.0655138625 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
19 Hb_179061_010 0.065752855 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
20 Hb_004093_070 0.0739273433 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]

Gene co-expression network

sample Hb_000062_040 Hb_000062_040 Hb_003623_060 Hb_003623_060 Hb_000062_040--Hb_003623_060 Hb_000275_030 Hb_000275_030 Hb_000062_040--Hb_000275_030 Hb_002527_020 Hb_002527_020 Hb_000062_040--Hb_002527_020 Hb_001900_050 Hb_001900_050 Hb_000062_040--Hb_001900_050 Hb_002857_010 Hb_002857_010 Hb_000062_040--Hb_002857_010 Hb_043346_010 Hb_043346_010 Hb_000062_040--Hb_043346_010 Hb_003623_060--Hb_000275_030 Hb_003623_060--Hb_001900_050 Hb_003623_060--Hb_002527_020 Hb_003623_060--Hb_002857_010 Hb_003623_060--Hb_043346_010 Hb_000275_030--Hb_001900_050 Hb_004643_050 Hb_004643_050 Hb_000275_030--Hb_004643_050 Hb_003003_060 Hb_003003_060 Hb_000275_030--Hb_003003_060 Hb_000275_030--Hb_002527_020 Hb_002527_020--Hb_002857_010 Hb_002527_020--Hb_043346_010 Hb_001695_050 Hb_001695_050 Hb_002527_020--Hb_001695_050 Hb_008493_010 Hb_008493_010 Hb_002527_020--Hb_008493_010 Hb_001900_050--Hb_004643_050 Hb_001900_050--Hb_003003_060 Hb_055467_010 Hb_055467_010 Hb_001900_050--Hb_055467_010 Hb_002857_010--Hb_043346_010 Hb_002857_010--Hb_001695_050 Hb_002857_010--Hb_008493_010 Hb_043346_010--Hb_001695_050 Hb_043346_010--Hb_008493_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.062286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.117105

CAGE analysis