Hb_008493_010

Information

Type -
Description -
Location Contig8493: 8139-10151
Sequence    

Annotation

kegg
ID csv:101215343
description beta-glucosidase 24-like
nr
ID KDP35757.1
description hypothetical protein JCGZ_10529 [Jatropha curcas]
swissprot
ID D5MTF8
description 4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1d, chloroplastic OS=Triticum aestivum GN=GLU1D PE=1 SV=1
trembl
ID A0A067KI43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10529 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60306: 8020-9759 , PASA_asmbl_60307: 8415-8697 , PASA_asmbl_60308: 8924-9174
cDNA
(Sanger)
(ID:Location)		 001_C15.ab1: 8020-9747 , 002_M09.ab1: 8025-9752 , 002_N01.ab1: 8025-9729 , 002_N23.ab1: 8025-9725 , 006_G22.ab1: 8020-9657 , 009_M14.ab1: 8025-9671 , 017_L03.ab1: 8025-9623 , 026_C22.ab1: 8025-9539 , 027_B18.ab1: 8025-9617 , 028_K03.ab1: 8020-9652 , 031_C21.ab1: 8020-9759 , 034_K12.ab1: 8020-9731 , 037_M09.ab1: 8020-9752 , 040_H05.ab1: 8020-9759 , 040_H11.ab1: 8020-9853 , 041_O12.ab1: 8025-9631 , 044_E07.ab1: 8020-9659 , 047_A15.ab1: 8020-9659 , 050_D03.ab1: 8024-9649

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008493_010 0.0 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
2 Hb_001695_050 0.0070768019 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
3 Hb_043346_010 0.0100014532 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
4 Hb_002857_010 0.0122139775 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
5 Hb_002527_020 0.0137328682 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
6 Hb_000062_040 0.0277320302 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
7 Hb_003623_060 0.0286447245 - - conserved hypothetical protein [Ricinus communis]
8 Hb_159229_030 0.0347432564 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
9 Hb_091378_010 0.0354009657 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_002457_010 0.0366757601 - - polyprotein [Oryza australiensis]
11 Hb_160190_010 0.0378084253 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_000275_030 0.0387015638 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001900_050 0.0423068679 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
14 Hb_009423_020 0.0563562195 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_004643_050 0.0594194705 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
16 Hb_003003_060 0.0618054991 - - -
17 Hb_006351_100 0.0627988793 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_001335_020 0.0652230223 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
19 Hb_010098_030 0.0697303878 - - conserved hypothetical protein [Ricinus communis]
20 Hb_055467_010 0.0705563243 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]

Gene co-expression network

sample Hb_008493_010 Hb_008493_010 Hb_001695_050 Hb_001695_050 Hb_008493_010--Hb_001695_050 Hb_043346_010 Hb_043346_010 Hb_008493_010--Hb_043346_010 Hb_002857_010 Hb_002857_010 Hb_008493_010--Hb_002857_010 Hb_002527_020 Hb_002527_020 Hb_008493_010--Hb_002527_020 Hb_000062_040 Hb_000062_040 Hb_008493_010--Hb_000062_040 Hb_003623_060 Hb_003623_060 Hb_008493_010--Hb_003623_060 Hb_001695_050--Hb_043346_010 Hb_001695_050--Hb_002857_010 Hb_001695_050--Hb_002527_020 Hb_001695_050--Hb_000062_040 Hb_001695_050--Hb_003623_060 Hb_043346_010--Hb_002857_010 Hb_043346_010--Hb_002527_020 Hb_043346_010--Hb_000062_040 Hb_043346_010--Hb_003623_060 Hb_002857_010--Hb_002527_020 Hb_002857_010--Hb_000062_040 Hb_002857_010--Hb_003623_060 Hb_002527_020--Hb_000062_040 Hb_002527_020--Hb_003623_060 Hb_000062_040--Hb_003623_060 Hb_000275_030 Hb_000275_030 Hb_000062_040--Hb_000275_030 Hb_001900_050 Hb_001900_050 Hb_000062_040--Hb_001900_050 Hb_003623_060--Hb_000275_030 Hb_003623_060--Hb_001900_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.199136 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.326837

CAGE analysis