Hb_000275_030

Information

Type -
Description -
Location Contig275: 26797-28256
Sequence    

Annotation

kegg
ID rcu:RCOM_0866550
description hypothetical protein
nr
ID XP_002519890.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S8Q6
description Tetraspanin-8 OS=Arabidopsis thaliana GN=TET8 PE=2 SV=1
trembl
ID B9S1M5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866550 PE=4 SV=1
Gene Ontology
ID GO:0016020
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000275_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001900_050 0.0036077681 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
3 Hb_003623_060 0.0100614349 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000062_040 0.0109743826 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
5 Hb_004643_050 0.0207381205 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
6 Hb_003003_060 0.0231274367 - - -
7 Hb_002527_020 0.0249740937 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
8 Hb_002857_010 0.0264926727 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
9 Hb_043346_010 0.0287046148 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
10 Hb_001695_050 0.031628265 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
11 Hb_055467_010 0.0318920711 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
12 Hb_008493_010 0.0387015638 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
13 Hb_000152_470 0.0409274737 - - -
14 Hb_000330_110 0.0424362229 - - -
15 Hb_179061_010 0.0547963174 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
16 Hb_004093_070 0.0629762246 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
17 Hb_100648_020 0.0650357108 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_153625_010 0.0714560387 - - PREDICTED: 21 kDa protein [Populus euphratica]
19 Hb_159229_030 0.0734062125 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
20 Hb_091378_010 0.0740628586 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_000275_030 Hb_000275_030 Hb_001900_050 Hb_001900_050 Hb_000275_030--Hb_001900_050 Hb_003623_060 Hb_003623_060 Hb_000275_030--Hb_003623_060 Hb_000062_040 Hb_000062_040 Hb_000275_030--Hb_000062_040 Hb_004643_050 Hb_004643_050 Hb_000275_030--Hb_004643_050 Hb_003003_060 Hb_003003_060 Hb_000275_030--Hb_003003_060 Hb_002527_020 Hb_002527_020 Hb_000275_030--Hb_002527_020 Hb_001900_050--Hb_003623_060 Hb_001900_050--Hb_000062_040 Hb_001900_050--Hb_004643_050 Hb_001900_050--Hb_003003_060 Hb_055467_010 Hb_055467_010 Hb_001900_050--Hb_055467_010 Hb_003623_060--Hb_000062_040 Hb_003623_060--Hb_002527_020 Hb_002857_010 Hb_002857_010 Hb_003623_060--Hb_002857_010 Hb_043346_010 Hb_043346_010 Hb_003623_060--Hb_043346_010 Hb_000062_040--Hb_002527_020 Hb_000062_040--Hb_002857_010 Hb_000062_040--Hb_043346_010 Hb_004643_050--Hb_003003_060 Hb_004643_050--Hb_055467_010 Hb_000152_470 Hb_000152_470 Hb_004643_050--Hb_000152_470 Hb_000330_110 Hb_000330_110 Hb_004643_050--Hb_000330_110 Hb_003003_060--Hb_055467_010 Hb_003003_060--Hb_000152_470 Hb_003003_060--Hb_000330_110 Hb_002527_020--Hb_002857_010 Hb_002527_020--Hb_043346_010 Hb_001695_050 Hb_001695_050 Hb_002527_020--Hb_001695_050 Hb_008493_010 Hb_008493_010 Hb_002527_020--Hb_008493_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0516712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.102591

CAGE analysis