Hb_055467_010

Information

Type -
Description -
Location Contig55467: 2526-3549
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_002312977.2
description hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
swissprot
ID O22040
description Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055467_010 0.0 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
2 Hb_003003_060 0.0087675889 - - -
3 Hb_000152_470 0.0090409026 - - -
4 Hb_000330_110 0.0105508184 - - -
5 Hb_004643_050 0.0111573132 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
6 Hb_179061_010 0.0229232169 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
7 Hb_001900_050 0.0282857588 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
8 Hb_004093_070 0.031114031 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
9 Hb_000275_030 0.0318920711 - - conserved hypothetical protein [Ricinus communis]
10 Hb_100648_020 0.0331766196 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
11 Hb_153625_010 0.0396075584 - - PREDICTED: 21 kDa protein [Populus euphratica]
12 Hb_003623_060 0.0419475706 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000062_040 0.0428598452 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
14 Hb_002112_030 0.0459225213 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
15 Hb_030370_080 0.0468230745 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
16 Hb_002527_020 0.0568465009 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
17 Hb_002857_010 0.0583633603 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
18 Hb_043346_010 0.0605726931 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
19 Hb_032050_030 0.0616674392 - - C, putative [Ricinus communis]
20 Hb_001695_050 0.0634927055 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_055467_010 Hb_055467_010 Hb_003003_060 Hb_003003_060 Hb_055467_010--Hb_003003_060 Hb_000152_470 Hb_000152_470 Hb_055467_010--Hb_000152_470 Hb_000330_110 Hb_000330_110 Hb_055467_010--Hb_000330_110 Hb_004643_050 Hb_004643_050 Hb_055467_010--Hb_004643_050 Hb_179061_010 Hb_179061_010 Hb_055467_010--Hb_179061_010 Hb_001900_050 Hb_001900_050 Hb_055467_010--Hb_001900_050 Hb_003003_060--Hb_004643_050 Hb_003003_060--Hb_000152_470 Hb_003003_060--Hb_000330_110 Hb_003003_060--Hb_001900_050 Hb_000275_030 Hb_000275_030 Hb_003003_060--Hb_000275_030 Hb_000152_470--Hb_000330_110 Hb_000152_470--Hb_179061_010 Hb_000152_470--Hb_004643_050 Hb_004093_070 Hb_004093_070 Hb_000152_470--Hb_004093_070 Hb_000330_110--Hb_179061_010 Hb_000330_110--Hb_004093_070 Hb_000330_110--Hb_004643_050 Hb_004643_050--Hb_001900_050 Hb_004643_050--Hb_000275_030 Hb_179061_010--Hb_004093_070 Hb_100648_020 Hb_100648_020 Hb_179061_010--Hb_100648_020 Hb_153625_010 Hb_153625_010 Hb_179061_010--Hb_153625_010 Hb_001900_050--Hb_000275_030 Hb_003623_060 Hb_003623_060 Hb_001900_050--Hb_003623_060 Hb_000062_040 Hb_000062_040 Hb_001900_050--Hb_000062_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0349862 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0816326

CAGE analysis