Hb_004093_070

Information

Type -
Description -
Location Contig4093: 128832-131891
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19500g
description POPTRDRAFT_762951; leucine-rich repeat transmembrane protein kinase
nr
ID XP_002309364.2
description leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
swissprot
ID Q9ZUI0
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1
trembl
ID B9HB50
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0006s19500g PE=3 SV=2
Gene Ontology
ID GO:0016021
description leucine-rich repeat receptor-like serine threonine-protein kinase at2g24130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004093_070 0.0 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
2 Hb_100648_020 0.002063693 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
3 Hb_179061_010 0.0081938037 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
4 Hb_153625_010 0.0084990028 - - PREDICTED: 21 kDa protein [Populus euphratica]
5 Hb_002112_030 0.0148196528 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
6 Hb_030370_080 0.0157211316 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
7 Hb_000330_110 0.0205666125 - - -
8 Hb_000152_470 0.0220762496 - - -
9 Hb_032050_030 0.0305850036 - - C, putative [Ricinus communis]
10 Hb_055467_010 0.031114031 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
11 Hb_003003_060 0.0398762721 - - -
12 Hb_000152_400 0.0402771994 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
13 Hb_004643_050 0.0422641524 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
14 Hb_020332_020 0.042542074 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_000202_110 0.0581654197 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
16 Hb_003060_130 0.0586465607 - - PREDICTED: protein P21-like [Jatropha curcas]
17 Hb_001900_050 0.0593746993 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
18 Hb_000275_030 0.0629762246 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003623_060 0.0730165726 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000062_040 0.0739273433 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]

Gene co-expression network

sample Hb_004093_070 Hb_004093_070 Hb_100648_020 Hb_100648_020 Hb_004093_070--Hb_100648_020 Hb_179061_010 Hb_179061_010 Hb_004093_070--Hb_179061_010 Hb_153625_010 Hb_153625_010 Hb_004093_070--Hb_153625_010 Hb_002112_030 Hb_002112_030 Hb_004093_070--Hb_002112_030 Hb_030370_080 Hb_030370_080 Hb_004093_070--Hb_030370_080 Hb_000330_110 Hb_000330_110 Hb_004093_070--Hb_000330_110 Hb_100648_020--Hb_153625_010 Hb_100648_020--Hb_179061_010 Hb_100648_020--Hb_002112_030 Hb_100648_020--Hb_030370_080 Hb_100648_020--Hb_000330_110 Hb_179061_010--Hb_000330_110 Hb_000152_470 Hb_000152_470 Hb_179061_010--Hb_000152_470 Hb_179061_010--Hb_153625_010 Hb_055467_010 Hb_055467_010 Hb_179061_010--Hb_055467_010 Hb_153625_010--Hb_002112_030 Hb_153625_010--Hb_030370_080 Hb_032050_030 Hb_032050_030 Hb_153625_010--Hb_032050_030 Hb_002112_030--Hb_030370_080 Hb_002112_030--Hb_032050_030 Hb_002112_030--Hb_179061_010 Hb_030370_080--Hb_032050_030 Hb_030370_080--Hb_179061_010 Hb_000330_110--Hb_000152_470 Hb_000330_110--Hb_055467_010 Hb_003003_060 Hb_003003_060 Hb_000330_110--Hb_003003_060 Hb_004643_050 Hb_004643_050 Hb_000330_110--Hb_004643_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00898143 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0246581

CAGE analysis